Hb_025194_020

Information

Type -
Description -
Location Contig25194: 15644-20992
Sequence    

Annotation

kegg
ID rcu:RCOM_1078920
description Atrazine chlorohydrolase, putative (EC:3.8.1.8)
nr
ID XP_012085739.1
description PREDICTED: uncharacterized protein C1F8.04c-like isoform X1 [Jatropha curcas]
swissprot
ID A5UMN6
description 5'-deoxyadenosine deaminase OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=dadD PE=3 SV=1
trembl
ID A0A067JSB6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18009 PE=4 SV=1
Gene Ontology
ID GO:0016810
description 5-methylthioadenosine s-adenosylhomocysteine deaminase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26324: 15754-20972
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_025194_020 0.0 - - PREDICTED: uncharacterized protein C1F8.04c-like isoform X1 [Jatropha curcas]
2 Hb_005048_100 0.0902550795 - - secretory carrier membrane protein, putative [Ricinus communis]
3 Hb_000365_030 0.1015515375 - - PREDICTED: transmembrane protein 87B [Jatropha curcas]
4 Hb_000237_190 0.1029227393 transcription factor TF Family: SNF2 PREDICTED: SNF2 domain-containing protein CLASSY 3 isoform X1 [Jatropha curcas]
5 Hb_001301_170 0.1053838702 - - PREDICTED: purple acid phosphatase 18 [Jatropha curcas]
6 Hb_004787_080 0.1055724673 - - PREDICTED: microtubule-associated protein RP/EB family member 1B [Jatropha curcas]
7 Hb_002259_080 0.1087548824 - - protein transport protein sec23, putative [Ricinus communis]
8 Hb_000130_020 0.1111278373 - - Phosphoenolpyruvate carboxylase, putative [Ricinus communis]
9 Hb_003913_110 0.1134101477 - - PREDICTED: uncharacterized protein LOC105640319 [Jatropha curcas]
10 Hb_000635_030 0.1135858554 - - mannosyl-oligosaccharide glucosidase, putative [Ricinus communis]
11 Hb_000030_060 0.1156814537 - - PREDICTED: T-complex protein 1 subunit theta [Jatropha curcas]
12 Hb_000823_030 0.1168302795 - - PREDICTED: DNA-directed RNA polymerase III subunit RPC5 [Jatropha curcas]
13 Hb_001235_140 0.1175143628 - - PREDICTED: protein arginine N-methyltransferase 1.6 [Jatropha curcas]
14 Hb_004267_040 0.1204243123 - - PREDICTED: transcriptional adapter ADA2a [Jatropha curcas]
15 Hb_005333_160 0.1206645017 - - hypothetical protein B456_009G230200 [Gossypium raimondii]
16 Hb_000307_210 0.1240658849 - - Transportin 1 isoform 1 [Theobroma cacao]
17 Hb_004627_060 0.1258778365 - - PREDICTED: ethylene receptor isoform X2 [Jatropha curcas]
18 Hb_010053_030 0.1259668582 - - PREDICTED: tRNA (cytosine(34)-C(5))-methyltransferase [Jatropha curcas]
19 Hb_002890_120 0.1262542113 - - Nucleic acid binding,RNA binding isoform 1 [Theobroma cacao]
20 Hb_002631_170 0.1273992621 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 36 [Jatropha curcas]

Gene co-expression network

sample Hb_025194_020 Hb_025194_020 Hb_005048_100 Hb_005048_100 Hb_025194_020--Hb_005048_100 Hb_000365_030 Hb_000365_030 Hb_025194_020--Hb_000365_030 Hb_000237_190 Hb_000237_190 Hb_025194_020--Hb_000237_190 Hb_001301_170 Hb_001301_170 Hb_025194_020--Hb_001301_170 Hb_004787_080 Hb_004787_080 Hb_025194_020--Hb_004787_080 Hb_002259_080 Hb_002259_080 Hb_025194_020--Hb_002259_080 Hb_002005_090 Hb_002005_090 Hb_005048_100--Hb_002005_090 Hb_002217_430 Hb_002217_430 Hb_005048_100--Hb_002217_430 Hb_005048_100--Hb_001301_170 Hb_002477_090 Hb_002477_090 Hb_005048_100--Hb_002477_090 Hb_002217_030 Hb_002217_030 Hb_005048_100--Hb_002217_030 Hb_000130_020 Hb_000130_020 Hb_000365_030--Hb_000130_020 Hb_178968_050 Hb_178968_050 Hb_000365_030--Hb_178968_050 Hb_001733_030 Hb_001733_030 Hb_000365_030--Hb_001733_030 Hb_004109_370 Hb_004109_370 Hb_000365_030--Hb_004109_370 Hb_000030_060 Hb_000030_060 Hb_000365_030--Hb_000030_060 Hb_000635_030 Hb_000635_030 Hb_000365_030--Hb_000635_030 Hb_000237_190--Hb_000130_020 Hb_000237_190--Hb_002259_080 Hb_000237_190--Hb_000365_030 Hb_000237_190--Hb_178968_050 Hb_030736_070 Hb_030736_070 Hb_000237_190--Hb_030736_070 Hb_010053_030 Hb_010053_030 Hb_001301_170--Hb_010053_030 Hb_000664_070 Hb_000664_070 Hb_001301_170--Hb_000664_070 Hb_104061_020 Hb_104061_020 Hb_001301_170--Hb_104061_020 Hb_000823_030 Hb_000823_030 Hb_001301_170--Hb_000823_030 Hb_008147_040 Hb_008147_040 Hb_001301_170--Hb_008147_040 Hb_001318_020 Hb_001318_020 Hb_001301_170--Hb_001318_020 Hb_002046_010 Hb_002046_010 Hb_004787_080--Hb_002046_010 Hb_001009_280 Hb_001009_280 Hb_004787_080--Hb_001009_280 Hb_000120_280 Hb_000120_280 Hb_004787_080--Hb_000120_280 Hb_004267_040 Hb_004267_040 Hb_004787_080--Hb_004267_040 Hb_000565_040 Hb_000565_040 Hb_004787_080--Hb_000565_040 Hb_183510_020 Hb_183510_020 Hb_004787_080--Hb_183510_020 Hb_002259_080--Hb_000635_030 Hb_141069_010 Hb_141069_010 Hb_002259_080--Hb_141069_010 Hb_002259_080--Hb_000130_020 Hb_002596_060 Hb_002596_060 Hb_002259_080--Hb_002596_060 Hb_000243_300 Hb_000243_300 Hb_002259_080--Hb_000243_300 Hb_002391_360 Hb_002391_360 Hb_002259_080--Hb_002391_360
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.6164 15.6512 12.9115 10.1983 25.6981 10.1546
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.12218 6.13812 6.03213 29.2249 10.0355

CAGE analysis