Hb_006816_170

Information

Type -
Description -
Location Contig6816: 126527-137127
Sequence    

Annotation

kegg
ID rcu:RCOM_1434780
description Pyrophosphate-energized vacuolar membrane proton pump, putative (EC:1.3.1.74)
nr
ID XP_012088873.1
description PREDICTED: pyrophosphate-energized vacuolar membrane proton pump 1-like [Jatropha curcas]
swissprot
ID P21616
description Pyrophosphate-energized vacuolar membrane proton pump OS=Vigna radiata var. radiata PE=1 SV=4
trembl
ID A0A067JHN7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23210 PE=3 SV=1
Gene Ontology
ID GO:0016020
description pyrophosphate-energized vacuolar membrane proton pump 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53800: 126874-127040
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006816_170 0.0 - - PREDICTED: pyrophosphate-energized vacuolar membrane proton pump 1-like [Jatropha curcas]
2 Hb_001247_200 0.1412357462 - - PREDICTED: clathrin coat assembly protein AP180 [Jatropha curcas]
3 Hb_002489_010 0.1497579221 - - hypothetical protein JCGZ_17199 [Jatropha curcas]
4 Hb_002239_040 0.1637702384 - - Cellular apoptosis susceptibility protein / importin-alpha re-exporter, putative isoform 1 [Theobroma cacao]
5 Hb_034299_040 0.1741713751 - - aldo-keto reductase, putative [Ricinus communis]
6 Hb_000384_030 0.1765286234 - - PREDICTED: uncharacterized protein LOC101310565 isoform X1 [Fragaria vesca subsp. vesca]
7 Hb_002233_090 0.1794032052 - - PREDICTED: bromodomain-containing protein 3 [Jatropha curcas]
8 Hb_024505_050 0.1795850158 transcription factor TF Family: ERF PPLZ02 family protein [Populus trichocarpa]
9 Hb_048476_170 0.1807473236 - - PREDICTED: cleavage and polyadenylation specificity factor subunit 3-II-like [Citrus sinensis]
10 Hb_001136_090 0.1819686164 - - Protein PNS1, putative [Ricinus communis]
11 Hb_000513_070 0.1857154662 - - PREDICTED: cysteine-rich receptor-like protein kinase 42 [Jatropha curcas]
12 Hb_058643_010 0.1861880155 - - hydrolase, putative [Ricinus communis]
13 Hb_004767_090 0.1869154263 - - Aspartic proteinase Asp1 precursor, putative [Ricinus communis]
14 Hb_008725_150 0.1876467162 - - endo-1,4-beta-glucanase, putative [Ricinus communis]
15 Hb_103494_010 0.1879089368 - - -
16 Hb_000358_150 0.1903517877 - - hypothetical protein VITISV_012309 [Vitis vinifera]
17 Hb_007943_130 0.1953903699 - - 3-hydroxyacyl-CoA dehyrogenase, putative [Ricinus communis]
18 Hb_000792_070 0.1958071825 - - Ataxin-3, putative [Ricinus communis]
19 Hb_001329_240 0.1985126676 - - hypothetical protein POPTR_0002s18920g [Populus trichocarpa]
20 Hb_001959_050 0.1998622857 - - PREDICTED: uncharacterized protein LOC103323811 isoform X1 [Prunus mume]

Gene co-expression network

sample Hb_006816_170 Hb_006816_170 Hb_001247_200 Hb_001247_200 Hb_006816_170--Hb_001247_200 Hb_002489_010 Hb_002489_010 Hb_006816_170--Hb_002489_010 Hb_002239_040 Hb_002239_040 Hb_006816_170--Hb_002239_040 Hb_034299_040 Hb_034299_040 Hb_006816_170--Hb_034299_040 Hb_000384_030 Hb_000384_030 Hb_006816_170--Hb_000384_030 Hb_002233_090 Hb_002233_090 Hb_006816_170--Hb_002233_090 Hb_001247_200--Hb_000384_030 Hb_000926_120 Hb_000926_120 Hb_001247_200--Hb_000926_120 Hb_001152_030 Hb_001152_030 Hb_001247_200--Hb_001152_030 Hb_000984_050 Hb_000984_050 Hb_001247_200--Hb_000984_050 Hb_058643_010 Hb_058643_010 Hb_001247_200--Hb_058643_010 Hb_002045_130 Hb_002045_130 Hb_002489_010--Hb_002045_130 Hb_024505_050 Hb_024505_050 Hb_002489_010--Hb_024505_050 Hb_000792_070 Hb_000792_070 Hb_002489_010--Hb_000792_070 Hb_004116_200 Hb_004116_200 Hb_002489_010--Hb_004116_200 Hb_003893_010 Hb_003893_010 Hb_002489_010--Hb_003893_010 Hb_000406_040 Hb_000406_040 Hb_002239_040--Hb_000406_040 Hb_003656_110 Hb_003656_110 Hb_002239_040--Hb_003656_110 Hb_003097_190 Hb_003097_190 Hb_002239_040--Hb_003097_190 Hb_002311_250 Hb_002311_250 Hb_002239_040--Hb_002311_250 Hb_000152_560 Hb_000152_560 Hb_002239_040--Hb_000152_560 Hb_002759_280 Hb_002759_280 Hb_034299_040--Hb_002759_280 Hb_004440_100 Hb_004440_100 Hb_034299_040--Hb_004440_100 Hb_051407_010 Hb_051407_010 Hb_034299_040--Hb_051407_010 Hb_000398_190 Hb_000398_190 Hb_034299_040--Hb_000398_190 Hb_001252_080 Hb_001252_080 Hb_034299_040--Hb_001252_080 Hb_109168_010 Hb_109168_010 Hb_034299_040--Hb_109168_010 Hb_001278_070 Hb_001278_070 Hb_000384_030--Hb_001278_070 Hb_000384_030--Hb_058643_010 Hb_002217_150 Hb_002217_150 Hb_000384_030--Hb_002217_150 Hb_009898_020 Hb_009898_020 Hb_000384_030--Hb_009898_020 Hb_002233_090--Hb_109168_010 Hb_001959_050 Hb_001959_050 Hb_002233_090--Hb_001959_050 Hb_000395_140 Hb_000395_140 Hb_002233_090--Hb_000395_140 Hb_001040_170 Hb_001040_170 Hb_002233_090--Hb_001040_170 Hb_006091_030 Hb_006091_030 Hb_002233_090--Hb_006091_030 Hb_002233_090--Hb_000926_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.587465 0.522013 0.318928 0.507588 3.52917 1.49123
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.429504 0.747166 1.65623 2.09657 0.419111

CAGE analysis