Hb_002489_010

Information

Type -
Description -
Location Contig2489: 11805-13164
Sequence    

Annotation

kegg
ID pop:POPTR_0019s098401
description hypothetical protein
nr
ID KDP45592.1
description hypothetical protein JCGZ_17199 [Jatropha curcas]
swissprot
ID Q9SCX7
description Inactive disease resistance protein RPS4 OS=Arabidopsis thaliana GN=RPS4 PE=3 SV=1
trembl
ID A0A067LB07
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17199 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002489_010 0.0 - - hypothetical protein JCGZ_17199 [Jatropha curcas]
2 Hb_006816_170 0.1497579221 - - PREDICTED: pyrophosphate-energized vacuolar membrane proton pump 1-like [Jatropha curcas]
3 Hb_002045_130 0.166377474 transcription factor TF Family: bZIP PREDICTED: light-inducible protein CPRF2 [Jatropha curcas]
4 Hb_024505_050 0.1811068672 transcription factor TF Family: ERF PPLZ02 family protein [Populus trichocarpa]
5 Hb_000792_070 0.1959553622 - - Ataxin-3, putative [Ricinus communis]
6 Hb_004116_200 0.1968945611 - - PREDICTED: flavonol synthase/flavanone 3-hydroxylase [Jatropha curcas]
7 Hb_003893_010 0.1976357859 - - hypothetical protein M569_16374 [Genlisea aurea]
8 Hb_001247_200 0.197803671 - - PREDICTED: clathrin coat assembly protein AP180 [Jatropha curcas]
9 Hb_034299_040 0.200000054 - - aldo-keto reductase, putative [Ricinus communis]
10 Hb_000189_640 0.2013683715 - - PREDICTED: probable RNA helicase SDE3 [Jatropha curcas]
11 Hb_002239_040 0.2015793566 - - Cellular apoptosis susceptibility protein / importin-alpha re-exporter, putative isoform 1 [Theobroma cacao]
12 Hb_123051_020 0.2017989121 - - hypothetical protein POPTR_2151s00200g [Populus trichocarpa]
13 Hb_007101_170 0.2034084355 - - hypothetical protein POPTR_0010s10490g [Populus trichocarpa]
14 Hb_007943_130 0.2067266424 - - 3-hydroxyacyl-CoA dehyrogenase, putative [Ricinus communis]
15 Hb_008376_010 0.2098959549 - - -
16 Hb_002759_280 0.2111465854 - - PREDICTED: uncharacterized protein LOC105649824 [Jatropha curcas]
17 Hb_004221_050 0.2137030708 - - PREDICTED: probable serine/threonine-protein kinase At1g01540 [Jatropha curcas]
18 Hb_001329_240 0.2137664704 - - hypothetical protein POPTR_0002s18920g [Populus trichocarpa]
19 Hb_002027_120 0.2156278146 - - PREDICTED: putative E3 ubiquitin-protein ligase RF298 [Jatropha curcas]
20 Hb_004871_070 0.2156387013 - - PREDICTED: uncharacterized protein LOC105632531 [Jatropha curcas]

Gene co-expression network

sample Hb_002489_010 Hb_002489_010 Hb_006816_170 Hb_006816_170 Hb_002489_010--Hb_006816_170 Hb_002045_130 Hb_002045_130 Hb_002489_010--Hb_002045_130 Hb_024505_050 Hb_024505_050 Hb_002489_010--Hb_024505_050 Hb_000792_070 Hb_000792_070 Hb_002489_010--Hb_000792_070 Hb_004116_200 Hb_004116_200 Hb_002489_010--Hb_004116_200 Hb_003893_010 Hb_003893_010 Hb_002489_010--Hb_003893_010 Hb_001247_200 Hb_001247_200 Hb_006816_170--Hb_001247_200 Hb_002239_040 Hb_002239_040 Hb_006816_170--Hb_002239_040 Hb_034299_040 Hb_034299_040 Hb_006816_170--Hb_034299_040 Hb_000384_030 Hb_000384_030 Hb_006816_170--Hb_000384_030 Hb_002233_090 Hb_002233_090 Hb_006816_170--Hb_002233_090 Hb_000189_640 Hb_000189_640 Hb_002045_130--Hb_000189_640 Hb_002045_130--Hb_004116_200 Hb_000365_020 Hb_000365_020 Hb_002045_130--Hb_000365_020 Hb_002045_130--Hb_003893_010 Hb_001500_040 Hb_001500_040 Hb_002045_130--Hb_001500_040 Hb_001329_240 Hb_001329_240 Hb_024505_050--Hb_001329_240 Hb_024505_050--Hb_006816_170 Hb_024505_050--Hb_034299_040 Hb_002131_040 Hb_002131_040 Hb_024505_050--Hb_002131_040 Hb_004342_030 Hb_004342_030 Hb_024505_050--Hb_004342_030 Hb_000116_300 Hb_000116_300 Hb_000792_070--Hb_000116_300 Hb_001136_090 Hb_001136_090 Hb_000792_070--Hb_001136_090 Hb_007101_170 Hb_007101_170 Hb_000792_070--Hb_007101_170 Hb_001894_150 Hb_001894_150 Hb_000792_070--Hb_001894_150 Hb_000676_110 Hb_000676_110 Hb_000792_070--Hb_000676_110 Hb_148909_010 Hb_148909_010 Hb_000792_070--Hb_148909_010 Hb_003750_080 Hb_003750_080 Hb_004116_200--Hb_003750_080 Hb_163145_020 Hb_163145_020 Hb_004116_200--Hb_163145_020 Hb_000635_220 Hb_000635_220 Hb_004116_200--Hb_000635_220 Hb_004116_200--Hb_001500_040 Hb_001856_020 Hb_001856_020 Hb_004116_200--Hb_001856_020 Hb_001959_210 Hb_001959_210 Hb_003893_010--Hb_001959_210 Hb_003893_010--Hb_000189_640 Hb_000200_050 Hb_000200_050 Hb_003893_010--Hb_000200_050 Hb_000483_200 Hb_000483_200 Hb_003893_010--Hb_000483_200 Hb_003893_010--Hb_001500_040 Hb_000602_010 Hb_000602_010 Hb_003893_010--Hb_000602_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.388495 0.260966 0 0.242613 1.45212 0.598949
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.380326 0.478418 0.965093 1.11717 0.118908

CAGE analysis