Hb_001329_240

Information

Type -
Description -
Location Contig1329: 174258-176505
Sequence    

Annotation

kegg
ID pop:POPTR_0002s18920g
description POPTRDRAFT_552606; hypothetical protein
nr
ID XP_002301546.2
description hypothetical protein POPTR_0002s18920g [Populus trichocarpa]
swissprot
ID Q6NNN0
description Protein RADIALIS-like 3 OS=Arabidopsis thaliana GN=RL3 PE=2 SV=1
trembl
ID B9GT90
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0002s18920g PE=4 SV=2
Gene Ontology
ID GO:0003677
description protein radialis-like 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09431: 174751-174986
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001329_240 0.0 - - hypothetical protein POPTR_0002s18920g [Populus trichocarpa]
2 Hb_024505_050 0.1707248255 transcription factor TF Family: ERF PPLZ02 family protein [Populus trichocarpa]
3 Hb_006816_170 0.1985126676 - - PREDICTED: pyrophosphate-energized vacuolar membrane proton pump 1-like [Jatropha curcas]
4 Hb_001247_200 0.2076669801 - - PREDICTED: clathrin coat assembly protein AP180 [Jatropha curcas]
5 Hb_123051_020 0.2105130251 - - hypothetical protein POPTR_2151s00200g [Populus trichocarpa]
6 Hb_002489_010 0.2137664704 - - hypothetical protein JCGZ_17199 [Jatropha curcas]
7 Hb_002131_040 0.2316918859 - - proton-dependent oligopeptide transport family protein [Populus trichocarpa]
8 Hb_000384_030 0.2351754224 - - PREDICTED: uncharacterized protein LOC101310565 isoform X1 [Fragaria vesca subsp. vesca]
9 Hb_000513_070 0.2458874784 - - PREDICTED: cysteine-rich receptor-like protein kinase 42 [Jatropha curcas]
10 Hb_005273_040 0.2459515029 - - -
11 Hb_004348_010 0.257173878 - - hypothetical protein POPTR_0077s002302g, partial [Populus trichocarpa]
12 Hb_103494_010 0.2592904352 - - -
13 Hb_000504_090 0.2649503169 - - PREDICTED: titin isoform X10 [Jatropha curcas]
14 Hb_002239_040 0.2684831071 - - Cellular apoptosis susceptibility protein / importin-alpha re-exporter, putative isoform 1 [Theobroma cacao]
15 Hb_002407_080 0.2710009825 - - hypothetical protein JCGZ_00752 [Jatropha curcas]
16 Hb_004342_030 0.2716053623 - - phosphofructokinase [Hevea brasiliensis]
17 Hb_000984_050 0.2726930158 - - sucrose transporter 5 [Hevea brasiliensis]
18 Hb_001278_070 0.2779219635 - - hypothetical protein glysoja_020139 [Glycine soja]
19 Hb_001902_070 0.2789177394 - - ATP binding protein, putative [Ricinus communis]
20 Hb_000009_620 0.2795954839 - - zinc finger protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_001329_240 Hb_001329_240 Hb_024505_050 Hb_024505_050 Hb_001329_240--Hb_024505_050 Hb_006816_170 Hb_006816_170 Hb_001329_240--Hb_006816_170 Hb_001247_200 Hb_001247_200 Hb_001329_240--Hb_001247_200 Hb_123051_020 Hb_123051_020 Hb_001329_240--Hb_123051_020 Hb_002489_010 Hb_002489_010 Hb_001329_240--Hb_002489_010 Hb_002131_040 Hb_002131_040 Hb_001329_240--Hb_002131_040 Hb_024505_050--Hb_006816_170 Hb_024505_050--Hb_002489_010 Hb_034299_040 Hb_034299_040 Hb_024505_050--Hb_034299_040 Hb_024505_050--Hb_002131_040 Hb_004342_030 Hb_004342_030 Hb_024505_050--Hb_004342_030 Hb_006816_170--Hb_001247_200 Hb_006816_170--Hb_002489_010 Hb_002239_040 Hb_002239_040 Hb_006816_170--Hb_002239_040 Hb_006816_170--Hb_034299_040 Hb_000384_030 Hb_000384_030 Hb_006816_170--Hb_000384_030 Hb_002233_090 Hb_002233_090 Hb_006816_170--Hb_002233_090 Hb_001247_200--Hb_000384_030 Hb_000926_120 Hb_000926_120 Hb_001247_200--Hb_000926_120 Hb_001152_030 Hb_001152_030 Hb_001247_200--Hb_001152_030 Hb_000984_050 Hb_000984_050 Hb_001247_200--Hb_000984_050 Hb_058643_010 Hb_058643_010 Hb_001247_200--Hb_058643_010 Hb_123051_020--Hb_002489_010 Hb_000009_620 Hb_000009_620 Hb_123051_020--Hb_000009_620 Hb_123051_020--Hb_024505_050 Hb_004348_010 Hb_004348_010 Hb_123051_020--Hb_004348_010 Hb_155123_010 Hb_155123_010 Hb_123051_020--Hb_155123_010 Hb_002045_130 Hb_002045_130 Hb_002489_010--Hb_002045_130 Hb_000792_070 Hb_000792_070 Hb_002489_010--Hb_000792_070 Hb_004116_200 Hb_004116_200 Hb_002489_010--Hb_004116_200 Hb_003893_010 Hb_003893_010 Hb_002489_010--Hb_003893_010 Hb_002131_040--Hb_006816_170 Hb_008725_150 Hb_008725_150 Hb_002131_040--Hb_008725_150 Hb_002131_040--Hb_001247_200 Hb_002374_430 Hb_002374_430 Hb_002131_040--Hb_002374_430
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.94982 1.83343 0.178423 0.910447 11.3171 2.86753
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.750451 0.89658 3.2989 10.6787 0.321526

CAGE analysis