Hb_004348_010

Information

Type -
Description -
Location Contig4348: 9933-12781
Sequence    

Annotation

kegg
ID pop:POPTR_0077s002302
description hypothetical protein
nr
ID XP_006388911.1
description hypothetical protein POPTR_0077s002302g, partial [Populus trichocarpa]
swissprot
ID Q40392
description TMV resistance protein N OS=Nicotiana glutinosa GN=N PE=1 SV=1
trembl
ID U7DXX4
description Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0077s002302g PE=4 SV=1
Gene Ontology
ID GO:0005515
description protein suppressor of npr1- constitutive 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004348_010 0.0 - - hypothetical protein POPTR_0077s002302g, partial [Populus trichocarpa]
2 Hb_002239_040 0.2006206261 - - Cellular apoptosis susceptibility protein / importin-alpha re-exporter, putative isoform 1 [Theobroma cacao]
3 Hb_006816_170 0.201904844 - - PREDICTED: pyrophosphate-energized vacuolar membrane proton pump 1-like [Jatropha curcas]
4 Hb_002311_250 0.212727274 - - hypothetical protein JCGZ_18936 [Jatropha curcas]
5 Hb_004129_120 0.2161300785 - - -
6 Hb_002374_440 0.2179336492 - - conserved hypothetical protein [Ricinus communis]
7 Hb_001902_070 0.2240731116 - - ATP binding protein, putative [Ricinus communis]
8 Hb_186982_030 0.2243173613 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000920_270 0.227782016 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_24521 [Jatropha curcas]
10 Hb_123051_020 0.2292389315 - - hypothetical protein POPTR_2151s00200g [Populus trichocarpa]
11 Hb_004645_040 0.2292668971 - - glucose-methanol-choline (gmc) oxidoreductase, putative [Ricinus communis]
12 Hb_003097_190 0.2299514351 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 3 [Jatropha curcas]
13 Hb_103494_010 0.231763017 - - -
14 Hb_002489_010 0.2335573874 - - hypothetical protein JCGZ_17199 [Jatropha curcas]
15 Hb_011344_010 0.2370877999 - - PREDICTED: NADH dehydrogenase (ubiquinone) complex I, assembly factor 6 [Jatropha curcas]
16 Hb_001946_360 0.2377411425 - - PREDICTED: nuclear pore complex protein NUP88 [Jatropha curcas]
17 Hb_008725_150 0.2426713825 - - endo-1,4-beta-glucanase, putative [Ricinus communis]
18 Hb_003688_200 0.2429128131 - - conserved hypothetical protein [Ricinus communis]
19 Hb_114310_040 0.2440988442 - - PREDICTED: purple acid phosphatase 2-like [Jatropha curcas]
20 Hb_003656_110 0.2464153274 - - phospholipid:diacylglycerol acyltransferase 1-like [Jatropha curcas]

Gene co-expression network

sample Hb_004348_010 Hb_004348_010 Hb_002239_040 Hb_002239_040 Hb_004348_010--Hb_002239_040 Hb_006816_170 Hb_006816_170 Hb_004348_010--Hb_006816_170 Hb_002311_250 Hb_002311_250 Hb_004348_010--Hb_002311_250 Hb_004129_120 Hb_004129_120 Hb_004348_010--Hb_004129_120 Hb_002374_440 Hb_002374_440 Hb_004348_010--Hb_002374_440 Hb_001902_070 Hb_001902_070 Hb_004348_010--Hb_001902_070 Hb_000406_040 Hb_000406_040 Hb_002239_040--Hb_000406_040 Hb_003656_110 Hb_003656_110 Hb_002239_040--Hb_003656_110 Hb_003097_190 Hb_003097_190 Hb_002239_040--Hb_003097_190 Hb_002239_040--Hb_002311_250 Hb_002239_040--Hb_006816_170 Hb_000152_560 Hb_000152_560 Hb_002239_040--Hb_000152_560 Hb_001247_200 Hb_001247_200 Hb_006816_170--Hb_001247_200 Hb_002489_010 Hb_002489_010 Hb_006816_170--Hb_002489_010 Hb_034299_040 Hb_034299_040 Hb_006816_170--Hb_034299_040 Hb_000384_030 Hb_000384_030 Hb_006816_170--Hb_000384_030 Hb_002233_090 Hb_002233_090 Hb_006816_170--Hb_002233_090 Hb_011457_160 Hb_011457_160 Hb_002311_250--Hb_011457_160 Hb_001946_360 Hb_001946_360 Hb_002311_250--Hb_001946_360 Hb_011344_010 Hb_011344_010 Hb_002311_250--Hb_011344_010 Hb_002311_250--Hb_002374_440 Hb_009680_030 Hb_009680_030 Hb_002311_250--Hb_009680_030 Hb_000261_260 Hb_000261_260 Hb_004129_120--Hb_000261_260 Hb_002471_150 Hb_002471_150 Hb_004129_120--Hb_002471_150 Hb_007803_010 Hb_007803_010 Hb_004129_120--Hb_007803_010 Hb_007590_010 Hb_007590_010 Hb_004129_120--Hb_007590_010 Hb_003073_200 Hb_003073_200 Hb_004129_120--Hb_003073_200 Hb_000009_590 Hb_000009_590 Hb_004129_120--Hb_000009_590 Hb_029388_040 Hb_029388_040 Hb_002374_440--Hb_029388_040 Hb_005228_100 Hb_005228_100 Hb_002374_440--Hb_005228_100 Hb_012340_020 Hb_012340_020 Hb_002374_440--Hb_012340_020 Hb_004374_050 Hb_004374_050 Hb_002374_440--Hb_004374_050 Hb_001769_020 Hb_001769_020 Hb_002374_440--Hb_001769_020 Hb_003688_200 Hb_003688_200 Hb_002374_440--Hb_003688_200 Hb_002890_210 Hb_002890_210 Hb_001902_070--Hb_002890_210 Hb_186982_030 Hb_186982_030 Hb_001902_070--Hb_186982_030 Hb_000395_140 Hb_000395_140 Hb_001902_070--Hb_000395_140 Hb_054380_010 Hb_054380_010 Hb_001902_070--Hb_054380_010 Hb_001278_070 Hb_001278_070 Hb_001902_070--Hb_001278_070 Hb_002284_300 Hb_002284_300 Hb_001902_070--Hb_002284_300
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0678412 0.0620196 0.025305 0.0139028 0.449339 0.142274
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0387174 0.152283 0.113537 0.158495 0

CAGE analysis