Hb_004374_050

Information

Type -
Description -
Location Contig4374: 72468-74007
Sequence    

Annotation

kegg
ID rcu:RCOM_1688050
description hypothetical protein
nr
ID XP_002509847.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RCG3
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1688050 PE=4 SV=1
Gene Ontology
ID GO:0050896
description conserved hypothetical protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42493: 72457-73579
cDNA
(Sanger)
(ID:Location)		 023_E04.ab1: 72457-73409 , 031_G16.ab1: 72457-73409

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004374_050 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_001769_020 0.1010611266 - - PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial-like [Jatropha curcas]
3 Hb_002374_440 0.123577065 - - conserved hypothetical protein [Ricinus communis]
4 Hb_005228_100 0.1307383091 - - -
5 Hb_000258_130 0.1335413666 - - -
6 Hb_010068_030 0.1505109177 - - aconitase, putative [Ricinus communis]
7 Hb_004645_040 0.1541147399 - - glucose-methanol-choline (gmc) oxidoreductase, putative [Ricinus communis]
8 Hb_179511_010 0.1573546092 - - -
9 Hb_000300_380 0.1595874921 - - -
10 Hb_000922_150 0.1604043096 - - -
11 Hb_003097_190 0.1680130526 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 3 [Jatropha curcas]
12 Hb_027556_010 0.1701909164 - - -
13 Hb_002843_100 0.1721312437 - - -
14 Hb_002400_390 0.1751295565 - - PREDICTED: 60S ribosomal protein L4 [Vitis vinifera]
15 Hb_001341_040 0.1751385656 - - hypothetical protein JCGZ_05578 [Jatropha curcas]
16 Hb_005015_010 0.1752558665 - - PREDICTED: programmed cell death protein 2-like [Jatropha curcas]
17 Hb_017438_020 0.1757376543 - - -
18 Hb_015456_020 0.1765776891 - - -
19 Hb_012340_020 0.1779751781 - - PREDICTED: putative pentatricopeptide repeat-containing protein At3g25060, mitochondrial [Jatropha curcas]
20 Hb_029388_040 0.1797803483 - - PREDICTED: GEM-like protein 5 [Jatropha curcas]

Gene co-expression network

sample Hb_004374_050 Hb_004374_050 Hb_001769_020 Hb_001769_020 Hb_004374_050--Hb_001769_020 Hb_002374_440 Hb_002374_440 Hb_004374_050--Hb_002374_440 Hb_005228_100 Hb_005228_100 Hb_004374_050--Hb_005228_100 Hb_000258_130 Hb_000258_130 Hb_004374_050--Hb_000258_130 Hb_010068_030 Hb_010068_030 Hb_004374_050--Hb_010068_030 Hb_004645_040 Hb_004645_040 Hb_004374_050--Hb_004645_040 Hb_001769_020--Hb_002374_440 Hb_179511_010 Hb_179511_010 Hb_001769_020--Hb_179511_010 Hb_000008_230 Hb_000008_230 Hb_001769_020--Hb_000008_230 Hb_001769_020--Hb_010068_030 Hb_012340_020 Hb_012340_020 Hb_001769_020--Hb_012340_020 Hb_029388_040 Hb_029388_040 Hb_002374_440--Hb_029388_040 Hb_002374_440--Hb_005228_100 Hb_002374_440--Hb_012340_020 Hb_003688_200 Hb_003688_200 Hb_002374_440--Hb_003688_200 Hb_005228_100--Hb_029388_040 Hb_000771_160 Hb_000771_160 Hb_005228_100--Hb_000771_160 Hb_011671_330 Hb_011671_330 Hb_005228_100--Hb_011671_330 Hb_000739_290 Hb_000739_290 Hb_005228_100--Hb_000739_290 Hb_000922_150 Hb_000922_150 Hb_000258_130--Hb_000922_150 Hb_017438_020 Hb_017438_020 Hb_000258_130--Hb_017438_020 Hb_000940_040 Hb_000940_040 Hb_000258_130--Hb_000940_040 Hb_000258_130--Hb_179511_010 Hb_000258_130--Hb_010068_030 Hb_000422_140 Hb_000422_140 Hb_000258_130--Hb_000422_140 Hb_003097_190 Hb_003097_190 Hb_010068_030--Hb_003097_190 Hb_000152_560 Hb_000152_560 Hb_010068_030--Hb_000152_560 Hb_010068_030--Hb_000422_140 Hb_002890_030 Hb_002890_030 Hb_010068_030--Hb_002890_030 Hb_002499_070 Hb_002499_070 Hb_010068_030--Hb_002499_070 Hb_000300_380 Hb_000300_380 Hb_004645_040--Hb_000300_380 Hb_004645_040--Hb_001769_020 Hb_001427_170 Hb_001427_170 Hb_004645_040--Hb_001427_170 Hb_011344_010 Hb_011344_010 Hb_004645_040--Hb_011344_010 Hb_011457_160 Hb_011457_160 Hb_004645_040--Hb_011457_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
21.2247 18.6057 1.43643 3.19772 77.6191 25.6398
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
21.16 24.899 9.00407 4.03909 2.92101

CAGE analysis