Hb_000922_150

Information

Type -
Description -
Location Contig922: 163534-165891
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000922_150 0.0 - - -
2 Hb_017438_020 0.0943596082 - - -
3 Hb_000258_130 0.1199370864 - - -
4 Hb_000300_380 0.1302919589 - - -
5 Hb_004374_050 0.1604043096 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000183_070 0.1639244417 - - -
7 Hb_005015_010 0.164242736 - - PREDICTED: programmed cell death protein 2-like [Jatropha curcas]
8 Hb_017417_010 0.1668453059 - - -
9 Hb_005714_040 0.1688333743 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000614_080 0.1705907624 - - -
11 Hb_000188_190 0.1706803548 - - -
12 Hb_015456_020 0.1729519779 - - -
13 Hb_008453_020 0.1739454454 - - PREDICTED: E3 ubiquitin-protein ligase ATL23 [Jatropha curcas]
14 Hb_000659_030 0.1751941248 - - pollen Ole e 1 allergen and extensin family protein, partial [Manihot esculenta]
15 Hb_004241_070 0.1768718604 - - PREDICTED: WD repeat-containing protein 25 [Jatropha curcas]
16 Hb_001158_040 0.1806350376 - - PREDICTED: SWI/SNF complex subunit SWI3A isoform X2 [Jatropha curcas]
17 Hb_012132_030 0.1823668072 - - PREDICTED: RNA polymerase-associated protein CTR9 homolog [Jatropha curcas]
18 Hb_001341_040 0.1827110023 - - hypothetical protein JCGZ_05578 [Jatropha curcas]
19 Hb_002276_190 0.1834078178 - - PREDICTED: uncharacterized protein LOC105640686 [Jatropha curcas]
20 Hb_001427_170 0.1835438131 - - PREDICTED: 40S ribosomal protein S15a-5-like [Populus euphratica]

Gene co-expression network

sample Hb_000922_150 Hb_000922_150 Hb_017438_020 Hb_017438_020 Hb_000922_150--Hb_017438_020 Hb_000258_130 Hb_000258_130 Hb_000922_150--Hb_000258_130 Hb_000300_380 Hb_000300_380 Hb_000922_150--Hb_000300_380 Hb_004374_050 Hb_004374_050 Hb_000922_150--Hb_004374_050 Hb_000183_070 Hb_000183_070 Hb_000922_150--Hb_000183_070 Hb_005015_010 Hb_005015_010 Hb_000922_150--Hb_005015_010 Hb_017438_020--Hb_000258_130 Hb_017438_020--Hb_000300_380 Hb_002942_220 Hb_002942_220 Hb_017438_020--Hb_002942_220 Hb_004241_070 Hb_004241_070 Hb_017438_020--Hb_004241_070 Hb_017168_010 Hb_017168_010 Hb_017438_020--Hb_017168_010 Hb_000940_040 Hb_000940_040 Hb_000258_130--Hb_000940_040 Hb_179511_010 Hb_179511_010 Hb_000258_130--Hb_179511_010 Hb_010068_030 Hb_010068_030 Hb_000258_130--Hb_010068_030 Hb_000422_140 Hb_000422_140 Hb_000258_130--Hb_000422_140 Hb_015456_020 Hb_015456_020 Hb_000300_380--Hb_015456_020 Hb_004204_190 Hb_004204_190 Hb_000300_380--Hb_004204_190 Hb_000958_010 Hb_000958_010 Hb_000300_380--Hb_000958_010 Hb_005333_040 Hb_005333_040 Hb_000300_380--Hb_005333_040 Hb_001769_020 Hb_001769_020 Hb_004374_050--Hb_001769_020 Hb_002374_440 Hb_002374_440 Hb_004374_050--Hb_002374_440 Hb_005228_100 Hb_005228_100 Hb_004374_050--Hb_005228_100 Hb_004374_050--Hb_000258_130 Hb_004374_050--Hb_010068_030 Hb_004645_040 Hb_004645_040 Hb_004374_050--Hb_004645_040 Hb_005714_040 Hb_005714_040 Hb_000183_070--Hb_005714_040 Hb_001437_300 Hb_001437_300 Hb_000183_070--Hb_001437_300 Hb_000183_070--Hb_005015_010 Hb_006501_150 Hb_006501_150 Hb_000183_070--Hb_006501_150 Hb_006452_190 Hb_006452_190 Hb_000183_070--Hb_006452_190 Hb_005389_140 Hb_005389_140 Hb_000183_070--Hb_005389_140 Hb_000188_190 Hb_000188_190 Hb_005015_010--Hb_000188_190 Hb_004096_170 Hb_004096_170 Hb_005015_010--Hb_004096_170 Hb_005015_010--Hb_005714_040 Hb_009801_010 Hb_009801_010 Hb_005015_010--Hb_009801_010 Hb_004374_010 Hb_004374_010 Hb_005015_010--Hb_004374_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.690449 0.242529 0.0402852 0.0484285 1.29913 0.291729
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.369384 0.387296 0.176215 0.156404 0.195655

CAGE analysis