Hb_004645_040

Information

Type -
Description -
Location Contig4645: 45700-47476
Sequence    

Annotation

kegg
ID rcu:RCOM_0836640
description glucose-methanol-choline (gmc) oxidoreductase, putative (EC:4.1.2.10)
nr
ID XP_002522448.1
description glucose-methanol-choline (gmc) oxidoreductase, putative [Ricinus communis]
swissprot
ID Q9S746
description Protein HOTHEAD OS=Arabidopsis thaliana GN=HTH PE=1 SV=1
trembl
ID B9S8X9
description Glucose-methanol-choline (Gmc) oxidoreductase, putative OS=Ricinus communis GN=RCOM_0836640 PE=3 SV=1
Gene Ontology
ID GO:0016614
description protein hothead-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004645_040 0.0 - - glucose-methanol-choline (gmc) oxidoreductase, putative [Ricinus communis]
2 Hb_004374_050 0.1541147399 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000300_380 0.173358454 - - -
4 Hb_001769_020 0.1735763928 - - PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial-like [Jatropha curcas]
5 Hb_001427_170 0.1746659147 - - PREDICTED: 40S ribosomal protein S15a-5-like [Populus euphratica]
6 Hb_011344_010 0.1836446007 - - PREDICTED: NADH dehydrogenase (ubiquinone) complex I, assembly factor 6 [Jatropha curcas]
7 Hb_011457_160 0.1856568878 - - PREDICTED: BI1-like protein [Jatropha curcas]
8 Hb_002311_250 0.1874951892 - - hypothetical protein JCGZ_18936 [Jatropha curcas]
9 Hb_002374_440 0.1916790368 - - conserved hypothetical protein [Ricinus communis]
10 Hb_010931_110 0.1920742339 - - ubiquitin-protein ligase, putative [Ricinus communis]
11 Hb_000258_130 0.1937321007 - - -
12 Hb_000958_010 0.1954580135 - - conserved hypothetical protein [Ricinus communis]
13 Hb_010068_030 0.1960118768 - - aconitase, putative [Ricinus communis]
14 Hb_003097_190 0.1962601714 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 3 [Jatropha curcas]
15 Hb_001341_040 0.196405525 - - hypothetical protein JCGZ_05578 [Jatropha curcas]
16 Hb_009680_030 0.1983736287 - - PREDICTED: heat shock protein 83-like [Jatropha curcas]
17 Hb_015456_020 0.1989225493 - - -
18 Hb_048985_010 0.1996606907 - - -
19 Hb_001623_580 0.2037275961 - - PREDICTED: histone-lysine N-methyltransferase family member SUVH9-like [Jatropha curcas]
20 Hb_001115_050 0.2052831719 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA4 [Jatropha curcas]

Gene co-expression network

sample Hb_004645_040 Hb_004645_040 Hb_004374_050 Hb_004374_050 Hb_004645_040--Hb_004374_050 Hb_000300_380 Hb_000300_380 Hb_004645_040--Hb_000300_380 Hb_001769_020 Hb_001769_020 Hb_004645_040--Hb_001769_020 Hb_001427_170 Hb_001427_170 Hb_004645_040--Hb_001427_170 Hb_011344_010 Hb_011344_010 Hb_004645_040--Hb_011344_010 Hb_011457_160 Hb_011457_160 Hb_004645_040--Hb_011457_160 Hb_004374_050--Hb_001769_020 Hb_002374_440 Hb_002374_440 Hb_004374_050--Hb_002374_440 Hb_005228_100 Hb_005228_100 Hb_004374_050--Hb_005228_100 Hb_000258_130 Hb_000258_130 Hb_004374_050--Hb_000258_130 Hb_010068_030 Hb_010068_030 Hb_004374_050--Hb_010068_030 Hb_015456_020 Hb_015456_020 Hb_000300_380--Hb_015456_020 Hb_000922_150 Hb_000922_150 Hb_000300_380--Hb_000922_150 Hb_017438_020 Hb_017438_020 Hb_000300_380--Hb_017438_020 Hb_004204_190 Hb_004204_190 Hb_000300_380--Hb_004204_190 Hb_000958_010 Hb_000958_010 Hb_000300_380--Hb_000958_010 Hb_005333_040 Hb_005333_040 Hb_000300_380--Hb_005333_040 Hb_001769_020--Hb_002374_440 Hb_179511_010 Hb_179511_010 Hb_001769_020--Hb_179511_010 Hb_000008_230 Hb_000008_230 Hb_001769_020--Hb_000008_230 Hb_001769_020--Hb_010068_030 Hb_012340_020 Hb_012340_020 Hb_001769_020--Hb_012340_020 Hb_001427_170--Hb_011344_010 Hb_004512_020 Hb_004512_020 Hb_001427_170--Hb_004512_020 Hb_182026_010 Hb_182026_010 Hb_001427_170--Hb_182026_010 Hb_005928_060 Hb_005928_060 Hb_001427_170--Hb_005928_060 Hb_012132_030 Hb_012132_030 Hb_001427_170--Hb_012132_030 Hb_017168_010 Hb_017168_010 Hb_001427_170--Hb_017168_010 Hb_001341_040 Hb_001341_040 Hb_011344_010--Hb_001341_040 Hb_001040_170 Hb_001040_170 Hb_011344_010--Hb_001040_170 Hb_002997_100 Hb_002997_100 Hb_011344_010--Hb_002997_100 Hb_001057_010 Hb_001057_010 Hb_011344_010--Hb_001057_010 Hb_000733_060 Hb_000733_060 Hb_011344_010--Hb_000733_060 Hb_002311_250 Hb_002311_250 Hb_011457_160--Hb_002311_250 Hb_003656_110 Hb_003656_110 Hb_011457_160--Hb_003656_110 Hb_000028_040 Hb_000028_040 Hb_011457_160--Hb_000028_040 Hb_011457_160--Hb_011344_010 Hb_002239_040 Hb_002239_040 Hb_011457_160--Hb_002239_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.4596 1.06484 0.239806 0.0707536 6.33704 2.08632
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.847036 3.06525 1.59798 0.340805 0.389135

CAGE analysis