Hb_010068_030

Information

Type -
Description -
Location Contig10068: 23841-31567
Sequence    

Annotation

kegg
ID rcu:RCOM_0082520
description aconitase, putative (EC:4.2.1.3)
nr
ID XP_002532564.1
description aconitase, putative [Ricinus communis]
swissprot
ID P49608
description Aconitate hydratase, cytoplasmic OS=Cucurbita maxima PE=2 SV=1
trembl
ID B9T2U5
description Aconitate hydratase OS=Ricinus communis GN=RCOM_0082520 PE=3 SV=1
Gene Ontology
ID GO:0003994
description aconitate cytoplasmic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00433: 23978-24363 , PASA_asmbl_00434: 30559-31115
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010068_030 0.0 - - aconitase, putative [Ricinus communis]
2 Hb_003097_190 0.0829641097 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 3 [Jatropha curcas]
3 Hb_000152_560 0.1061003303 - - hypothetical protein JCGZ_26236 [Jatropha curcas]
4 Hb_000422_140 0.1181395208 - - PREDICTED: apoptosis-inducing factor 2-like isoform X1 [Jatropha curcas]
5 Hb_002890_030 0.1226917931 desease resistance Gene Name: NB-ARC Disease resistance protein RGA2, putative [Ricinus communis]
6 Hb_002499_070 0.1240719636 - - PREDICTED: uncharacterized protein LOC105628378 isoform X2 [Jatropha curcas]
7 Hb_000258_130 0.1254691122 - - -
8 Hb_000861_070 0.1260209445 - - conserved hypothetical protein [Ricinus communis]
9 Hb_003688_200 0.127382731 - - conserved hypothetical protein [Ricinus communis]
10 Hb_001534_070 0.1281019722 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 38 [Eucalyptus grandis]
11 Hb_000906_060 0.128147958 - - PREDICTED: putative pentatricopeptide repeat-containing protein At3g08820 [Populus euphratica]
12 Hb_004656_060 0.1310603689 - - PREDICTED: uncharacterized protein LOC105634581 [Jatropha curcas]
13 Hb_012340_020 0.1324887854 - - PREDICTED: putative pentatricopeptide repeat-containing protein At3g25060, mitochondrial [Jatropha curcas]
14 Hb_029866_130 0.134404982 - - hypothetical protein JCGZ_00035 [Jatropha curcas]
15 Hb_005895_040 0.1345687842 - - PREDICTED: tRNA threonylcarbamoyladenosine dehydratase [Jatropha curcas]
16 Hb_106321_030 0.1365860632 - - PREDICTED: mitogen-activated protein kinase kinase kinase 1 [Jatropha curcas]
17 Hb_179511_010 0.1365910071 - - -
18 Hb_004678_020 0.1370306106 - - PREDICTED: protein YIF1B [Jatropha curcas]
19 Hb_000152_890 0.1372631813 - - hypothetical protein JCGZ_26265 [Jatropha curcas]
20 Hb_012654_010 0.1377357139 transcription factor TF Family: MYB-related PREDICTED: uncharacterized protein LOC105629849 [Jatropha curcas]

Gene co-expression network

sample Hb_010068_030 Hb_010068_030 Hb_003097_190 Hb_003097_190 Hb_010068_030--Hb_003097_190 Hb_000152_560 Hb_000152_560 Hb_010068_030--Hb_000152_560 Hb_000422_140 Hb_000422_140 Hb_010068_030--Hb_000422_140 Hb_002890_030 Hb_002890_030 Hb_010068_030--Hb_002890_030 Hb_002499_070 Hb_002499_070 Hb_010068_030--Hb_002499_070 Hb_000258_130 Hb_000258_130 Hb_010068_030--Hb_000258_130 Hb_012654_010 Hb_012654_010 Hb_003097_190--Hb_012654_010 Hb_003097_190--Hb_000152_560 Hb_001057_010 Hb_001057_010 Hb_003097_190--Hb_001057_010 Hb_003097_190--Hb_002890_030 Hb_000861_070 Hb_000861_070 Hb_003097_190--Hb_000861_070 Hb_000614_080 Hb_000614_080 Hb_000152_560--Hb_000614_080 Hb_000152_890 Hb_000152_890 Hb_000152_560--Hb_000152_890 Hb_029866_130 Hb_029866_130 Hb_000152_560--Hb_029866_130 Hb_000152_560--Hb_001057_010 Hb_005895_040 Hb_005895_040 Hb_000422_140--Hb_005895_040 Hb_144787_030 Hb_144787_030 Hb_000422_140--Hb_144787_030 Hb_004656_060 Hb_004656_060 Hb_000422_140--Hb_004656_060 Hb_000946_120 Hb_000946_120 Hb_000422_140--Hb_000946_120 Hb_000365_140 Hb_000365_140 Hb_000422_140--Hb_000365_140 Hb_002477_130 Hb_002477_130 Hb_000422_140--Hb_002477_130 Hb_002890_030--Hb_000861_070 Hb_002890_030--Hb_012654_010 Hb_004204_080 Hb_004204_080 Hb_002890_030--Hb_004204_080 Hb_002890_030--Hb_001057_010 Hb_008643_060 Hb_008643_060 Hb_002890_030--Hb_008643_060 Hb_004162_280 Hb_004162_280 Hb_002499_070--Hb_004162_280 Hb_002499_070--Hb_144787_030 Hb_002499_070--Hb_005895_040 Hb_001902_060 Hb_001902_060 Hb_002499_070--Hb_001902_060 Hb_002411_120 Hb_002411_120 Hb_002499_070--Hb_002411_120 Hb_000152_340 Hb_000152_340 Hb_002499_070--Hb_000152_340 Hb_000922_150 Hb_000922_150 Hb_000258_130--Hb_000922_150 Hb_017438_020 Hb_017438_020 Hb_000258_130--Hb_017438_020 Hb_000940_040 Hb_000940_040 Hb_000258_130--Hb_000940_040 Hb_179511_010 Hb_179511_010 Hb_000258_130--Hb_179511_010 Hb_000258_130--Hb_000422_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.89622 4.74686 1.28776 1.3687 11.5074 6.24462
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.46743 3.58914 2.36247 0.998988 0.828107

CAGE analysis