Hb_000152_560

Information

Type -
Description -
Location Contig152: 469168-470745
Sequence    

Annotation

kegg
ID pop:POPTR_0015s14630g
description POPTRDRAFT_575675; hypothetical protein
nr
ID KDP22405.1
description hypothetical protein JCGZ_26236 [Jatropha curcas]
swissprot
ID Q9SB36
description Pentatricopeptide repeat-containing protein At4g25270, chloroplastic OS=Arabidopsis thaliana GN=PCMP-E53 PE=3 SV=1
trembl
ID A0A067JQW8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26236 PE=4 SV=1
Gene Ontology
ID GO:0004127
description pentatricopeptide repeat-containing protein chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13015: 465153-468455 , PASA_asmbl_13016: 469626-470126
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000152_560 0.0 - - hypothetical protein JCGZ_26236 [Jatropha curcas]
2 Hb_003097_190 0.0873079401 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 3 [Jatropha curcas]
3 Hb_000614_080 0.0971625232 - - -
4 Hb_000152_890 0.1031047979 - - hypothetical protein JCGZ_26265 [Jatropha curcas]
5 Hb_010068_030 0.1061003303 - - aconitase, putative [Ricinus communis]
6 Hb_029866_130 0.1096812312 - - hypothetical protein JCGZ_00035 [Jatropha curcas]
7 Hb_001057_010 0.1110289277 - - cation-transporting atpase plant, putative [Ricinus communis]
8 Hb_000206_150 0.116145397 - - unnamed protein product [Coffea canephora]
9 Hb_000270_140 0.1170173367 - - PREDICTED: uncharacterized protein LOC105640478 isoform X1 [Jatropha curcas]
10 Hb_012654_010 0.121700425 transcription factor TF Family: MYB-related PREDICTED: uncharacterized protein LOC105629849 [Jatropha curcas]
11 Hb_017711_020 0.1231120969 - - PREDICTED: cysteine-rich repeat secretory protein 56 isoform X1 [Jatropha curcas]
12 Hb_000367_290 0.126779786 - - PREDICTED: uncharacterized protein LOC105640583 [Jatropha curcas]
13 Hb_000720_070 0.1272110177 transcription factor TF Family: HSF hypothetical protein JCGZ_20639 [Jatropha curcas]
14 Hb_005214_160 0.1280739118 - - PREDICTED: heat shock 70 kDa protein, mitochondrial [Jatropha curcas]
15 Hb_002942_220 0.1309020211 - - PREDICTED: uncharacterized protein LOC105648740 [Jatropha curcas]
16 Hb_003125_060 0.131585791 - - PREDICTED: snurportin-1 [Jatropha curcas]
17 Hb_011457_110 0.1316897656 - - PREDICTED: protein NETWORKED 1D [Jatropha curcas]
18 Hb_005725_020 0.1317588416 transcription factor TF Family: bZIP PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 2 [Jatropha curcas]
19 Hb_017168_010 0.1333960471 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000413_130 0.1337245036 - - PREDICTED: uncharacterized protein LOC105649409 [Jatropha curcas]

Gene co-expression network

sample Hb_000152_560 Hb_000152_560 Hb_003097_190 Hb_003097_190 Hb_000152_560--Hb_003097_190 Hb_000614_080 Hb_000614_080 Hb_000152_560--Hb_000614_080 Hb_000152_890 Hb_000152_890 Hb_000152_560--Hb_000152_890 Hb_010068_030 Hb_010068_030 Hb_000152_560--Hb_010068_030 Hb_029866_130 Hb_029866_130 Hb_000152_560--Hb_029866_130 Hb_001057_010 Hb_001057_010 Hb_000152_560--Hb_001057_010 Hb_003097_190--Hb_010068_030 Hb_012654_010 Hb_012654_010 Hb_003097_190--Hb_012654_010 Hb_003097_190--Hb_001057_010 Hb_002890_030 Hb_002890_030 Hb_003097_190--Hb_002890_030 Hb_000861_070 Hb_000861_070 Hb_003097_190--Hb_000861_070 Hb_027405_020 Hb_027405_020 Hb_000614_080--Hb_027405_020 Hb_000029_160 Hb_000029_160 Hb_000614_080--Hb_000029_160 Hb_003125_060 Hb_003125_060 Hb_000614_080--Hb_003125_060 Hb_000614_080--Hb_000152_890 Hb_002813_010 Hb_002813_010 Hb_000614_080--Hb_002813_010 Hb_000367_290 Hb_000367_290 Hb_000152_890--Hb_000367_290 Hb_004032_350 Hb_004032_350 Hb_000152_890--Hb_004032_350 Hb_004724_360 Hb_004724_360 Hb_000152_890--Hb_004724_360 Hb_000001_180 Hb_000001_180 Hb_000152_890--Hb_000001_180 Hb_005314_010 Hb_005314_010 Hb_000152_890--Hb_005314_010 Hb_002133_030 Hb_002133_030 Hb_000152_890--Hb_002133_030 Hb_000422_140 Hb_000422_140 Hb_010068_030--Hb_000422_140 Hb_010068_030--Hb_002890_030 Hb_002499_070 Hb_002499_070 Hb_010068_030--Hb_002499_070 Hb_000258_130 Hb_000258_130 Hb_010068_030--Hb_000258_130 Hb_029866_130--Hb_000152_890 Hb_029866_130--Hb_001057_010 Hb_006478_110 Hb_006478_110 Hb_029866_130--Hb_006478_110 Hb_001454_060 Hb_001454_060 Hb_029866_130--Hb_001454_060 Hb_000413_130 Hb_000413_130 Hb_029866_130--Hb_000413_130 Hb_005214_160 Hb_005214_160 Hb_029866_130--Hb_005214_160 Hb_001057_010--Hb_012654_010 Hb_000340_510 Hb_000340_510 Hb_001057_010--Hb_000340_510 Hb_005237_010 Hb_005237_010 Hb_001057_010--Hb_005237_010 Hb_017168_010 Hb_017168_010 Hb_001057_010--Hb_017168_010 Hb_002942_220 Hb_002942_220 Hb_001057_010--Hb_002942_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.9264 5.59846 0.705466 1.66004 14.0863 6.71749
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.82865 2.71224 3.88357 2.4227 1.16633

CAGE analysis