Hb_006478_110

Information

Type -
Description -
Location Contig6478: 78492-82109
Sequence    

Annotation

kegg
ID rcu:RCOM_0646340
description type I inositol polyphosphate 5-phosphatase, putative (EC:3.1.3.56)
nr
ID XP_002524747.1
description type I inositol polyphosphate 5-phosphatase, putative [Ricinus communis]
swissprot
ID Q9LR47
description Type I inositol 1,4,5-trisphosphate 5-phosphatase CVP2 OS=Arabidopsis thaliana GN=CVP2 PE=1 SV=2
trembl
ID B9SFH8
description Type I inositol polyphosphate 5-phosphatase, putative OS=Ricinus communis GN=RCOM_0646340 PE=4 SV=1
Gene Ontology
ID GO:0046856
description type i inositol -trisphosphate 5-phosphatase cvp2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006478_110 0.0 - - type I inositol polyphosphate 5-phosphatase, putative [Ricinus communis]
2 Hb_000413_130 0.0847756314 - - PREDICTED: uncharacterized protein LOC105649409 [Jatropha curcas]
3 Hb_011671_330 0.0883157277 transcription factor TF Family: MYB-related PREDICTED: protein REVEILLE 4 [Jatropha curcas]
4 Hb_000161_030 0.0964864149 transcription factor TF Family: TCP PREDICTED: transcription factor TCP8 [Jatropha curcas]
5 Hb_001454_060 0.1014176554 - - uncharacterized protein LOC100527252 [Glycine max]
6 Hb_002341_030 0.1015292498 - - PREDICTED: transcription factor bHLH140 [Jatropha curcas]
7 Hb_012654_010 0.1015906829 transcription factor TF Family: MYB-related PREDICTED: uncharacterized protein LOC105629849 [Jatropha curcas]
8 Hb_000001_180 0.1038572486 - - PREDICTED: uncharacterized protein LOC105648978 [Jatropha curcas]
9 Hb_029866_130 0.1041579603 - - hypothetical protein JCGZ_00035 [Jatropha curcas]
10 Hb_000107_100 0.1053258857 - - hypothetical protein JCGZ_16208 [Jatropha curcas]
11 Hb_006091_030 0.1078295133 desease resistance Gene Name: AAA PREDICTED: cell division control protein 48 homolog C-like isoform X1 [Jatropha curcas]
12 Hb_000398_190 0.1109142724 - - PREDICTED: outer envelope protein 64, mitochondrial [Jatropha curcas]
13 Hb_000078_130 0.1148460409 - - -
14 Hb_001817_180 0.1151007951 - - PREDICTED: RING-H2 finger protein ATL47 [Jatropha curcas]
15 Hb_002890_030 0.1155794489 desease resistance Gene Name: NB-ARC Disease resistance protein RGA2, putative [Ricinus communis]
16 Hb_000490_030 0.1171784939 - - DNA-directed RNA polymerase II subunit, putative [Ricinus communis]
17 Hb_002725_070 0.1172773939 - - hypothetical protein PRUPE_ppa005949mg [Prunus persica]
18 Hb_000172_400 0.1172955501 - - Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis]
19 Hb_002377_050 0.1174665181 - - Agmatine deiminase, putative [Ricinus communis]
20 Hb_005314_010 0.1178806148 - - nucleotide binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_006478_110 Hb_006478_110 Hb_000413_130 Hb_000413_130 Hb_006478_110--Hb_000413_130 Hb_011671_330 Hb_011671_330 Hb_006478_110--Hb_011671_330 Hb_000161_030 Hb_000161_030 Hb_006478_110--Hb_000161_030 Hb_001454_060 Hb_001454_060 Hb_006478_110--Hb_001454_060 Hb_002341_030 Hb_002341_030 Hb_006478_110--Hb_002341_030 Hb_012654_010 Hb_012654_010 Hb_006478_110--Hb_012654_010 Hb_001431_070 Hb_001431_070 Hb_000413_130--Hb_001431_070 Hb_005314_010 Hb_005314_010 Hb_000413_130--Hb_005314_010 Hb_000367_290 Hb_000367_290 Hb_000413_130--Hb_000367_290 Hb_002725_070 Hb_002725_070 Hb_000413_130--Hb_002725_070 Hb_029281_010 Hb_029281_010 Hb_000413_130--Hb_029281_010 Hb_006091_030 Hb_006091_030 Hb_000413_130--Hb_006091_030 Hb_011671_330--Hb_000413_130 Hb_029866_130 Hb_029866_130 Hb_011671_330--Hb_029866_130 Hb_011671_330--Hb_029281_010 Hb_001633_110 Hb_001633_110 Hb_011671_330--Hb_001633_110 Hb_004931_040 Hb_004931_040 Hb_011671_330--Hb_004931_040 Hb_006029_010 Hb_006029_010 Hb_000161_030--Hb_006029_010 Hb_002818_040 Hb_002818_040 Hb_000161_030--Hb_002818_040 Hb_000078_130 Hb_000078_130 Hb_000161_030--Hb_000078_130 Hb_000491_080 Hb_000491_080 Hb_000161_030--Hb_000491_080 Hb_000161_030--Hb_000413_130 Hb_002377_050 Hb_002377_050 Hb_000161_030--Hb_002377_050 Hb_003494_240 Hb_003494_240 Hb_001454_060--Hb_003494_240 Hb_000608_120 Hb_000608_120 Hb_001454_060--Hb_000608_120 Hb_001454_060--Hb_000078_130 Hb_000703_080 Hb_000703_080 Hb_001454_060--Hb_000703_080 Hb_000172_400 Hb_000172_400 Hb_001454_060--Hb_000172_400 Hb_001817_180 Hb_001817_180 Hb_001454_060--Hb_001817_180 Hb_012016_020 Hb_012016_020 Hb_002341_030--Hb_012016_020 Hb_002341_030--Hb_002725_070 Hb_005635_010 Hb_005635_010 Hb_002341_030--Hb_005635_010 Hb_002928_060 Hb_002928_060 Hb_002341_030--Hb_002928_060 Hb_001504_160 Hb_001504_160 Hb_002341_030--Hb_001504_160 Hb_110364_010 Hb_110364_010 Hb_002341_030--Hb_110364_010 Hb_012654_010--Hb_001504_160 Hb_000107_100 Hb_000107_100 Hb_012654_010--Hb_000107_100 Hb_000139_250 Hb_000139_250 Hb_012654_010--Hb_000139_250 Hb_001057_010 Hb_001057_010 Hb_012654_010--Hb_001057_010 Hb_005214_160 Hb_005214_160 Hb_012654_010--Hb_005214_160 Hb_002701_080 Hb_002701_080 Hb_012654_010--Hb_002701_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.98893 1.3897 0.420553 0.215531 4.39492 3.71658
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.60497 1.29996 2.18098 0.894339 0.195997

CAGE analysis