Hb_000172_400

Information

Type -
Description -
Location Contig172: 451956-461325
Sequence    

Annotation

kegg
ID rcu:RCOM_0985440
description Aspartic proteinase nepenthesin-1 precursor, putative
nr
ID XP_002528982.1
description Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis]
swissprot
ID Q9LX20
description Aspartic proteinase-like protein 1 OS=Arabidopsis thaliana GN=At5g10080 PE=1 SV=1
trembl
ID B9SSL3
description Aspartic proteinase nepenthesin-1, putative OS=Ricinus communis GN=RCOM_0985440 PE=3 SV=1
Gene Ontology
ID GO:0046658
description aspartic proteinase-like protein 1 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16159: 451970-452668 , PASA_asmbl_16160: 452147-461167 , PASA_asmbl_16161: 455695-455832
cDNA
(Sanger)
(ID:Location)		 007_K08.ab1: 451970-452539 , 038_J07.ab1: 451970-452539

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000172_400 0.0 - - Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis]
2 Hb_002207_100 0.0623353824 - - PREDICTED: DNA-directed RNA polymerase V subunit 5A-like [Jatropha curcas]
3 Hb_000784_090 0.0822169901 - - PREDICTED: receptor homology region, transmembrane domain- and RING domain-containing protein 2 [Jatropha curcas]
4 Hb_001454_060 0.0822325837 - - uncharacterized protein LOC100527252 [Glycine max]
5 Hb_000340_510 0.0842609923 - - PREDICTED: serine/threonine-protein phosphatase BSL1 [Jatropha curcas]
6 Hb_001030_120 0.0843758295 - - PREDICTED: tyrosine--tRNA ligase, cytoplasmic-like [Jatropha curcas]
7 Hb_003638_030 0.0845198963 - - PREDICTED: uncharacterized protein LOC105645805 [Jatropha curcas]
8 Hb_000608_120 0.0850445854 - - PREDICTED: uncharacterized protein LOC105644872 [Jatropha curcas]
9 Hb_000078_130 0.0852276503 - - -
10 Hb_033491_010 0.0906244652 - - Phosphatidylinositol N-acetylglucosaminyltransferase subunit C, putative [Ricinus communis]
11 Hb_002215_050 0.0913367625 - - protein phosphatase 2a, regulatory subunit, putative [Ricinus communis]
12 Hb_026048_100 0.0919187681 - - PREDICTED: putative cell division cycle ATPase [Jatropha curcas]
13 Hb_000592_050 0.091955409 - - PREDICTED: golgin candidate 2 [Jatropha curcas]
14 Hb_002249_140 0.0922314564 - - PREDICTED: uncharacterized protein LOC105648715 [Jatropha curcas]
15 Hb_001214_130 0.0923671207 - - PREDICTED: uncharacterized protein LOC105646578 [Jatropha curcas]
16 Hb_003581_140 0.093270327 - - PREDICTED: hypersensitive-induced response protein 1-like [Nelumbo nucifera]
17 Hb_001369_060 0.0940519213 - - PREDICTED: uncharacterized Rho GTPase-activating protein At5g61530 [Jatropha curcas]
18 Hb_000418_100 0.0947581701 - - PREDICTED: F-box protein SKIP19-like [Gossypium raimondii]
19 Hb_000490_030 0.0950831999 - - DNA-directed RNA polymerase II subunit, putative [Ricinus communis]
20 Hb_000481_010 0.0951688156 - - PREDICTED: F-box/kelch-repeat protein SKIP6 [Jatropha curcas]

Gene co-expression network

sample Hb_000172_400 Hb_000172_400 Hb_002207_100 Hb_002207_100 Hb_000172_400--Hb_002207_100 Hb_000784_090 Hb_000784_090 Hb_000172_400--Hb_000784_090 Hb_001454_060 Hb_001454_060 Hb_000172_400--Hb_001454_060 Hb_000340_510 Hb_000340_510 Hb_000172_400--Hb_000340_510 Hb_001030_120 Hb_001030_120 Hb_000172_400--Hb_001030_120 Hb_003638_030 Hb_003638_030 Hb_000172_400--Hb_003638_030 Hb_002207_100--Hb_003638_030 Hb_098709_010 Hb_098709_010 Hb_002207_100--Hb_098709_010 Hb_033491_010 Hb_033491_010 Hb_002207_100--Hb_033491_010 Hb_000365_360 Hb_000365_360 Hb_002207_100--Hb_000365_360 Hb_000035_380 Hb_000035_380 Hb_002207_100--Hb_000035_380 Hb_000784_090--Hb_033491_010 Hb_000481_010 Hb_000481_010 Hb_000784_090--Hb_000481_010 Hb_002215_050 Hb_002215_050 Hb_000784_090--Hb_002215_050 Hb_002249_140 Hb_002249_140 Hb_000784_090--Hb_002249_140 Hb_001493_100 Hb_001493_100 Hb_000784_090--Hb_001493_100 Hb_001369_060 Hb_001369_060 Hb_000784_090--Hb_001369_060 Hb_003494_240 Hb_003494_240 Hb_001454_060--Hb_003494_240 Hb_000608_120 Hb_000608_120 Hb_001454_060--Hb_000608_120 Hb_000078_130 Hb_000078_130 Hb_001454_060--Hb_000078_130 Hb_000703_080 Hb_000703_080 Hb_001454_060--Hb_000703_080 Hb_001817_180 Hb_001817_180 Hb_001454_060--Hb_001817_180 Hb_002818_040 Hb_002818_040 Hb_000340_510--Hb_002818_040 Hb_000340_510--Hb_000481_010 Hb_000001_180 Hb_000001_180 Hb_000340_510--Hb_000001_180 Hb_000107_100 Hb_000107_100 Hb_000340_510--Hb_000107_100 Hb_002026_110 Hb_002026_110 Hb_000340_510--Hb_002026_110 Hb_017168_010 Hb_017168_010 Hb_000340_510--Hb_017168_010 Hb_004195_160 Hb_004195_160 Hb_001030_120--Hb_004195_160 Hb_002686_270 Hb_002686_270 Hb_001030_120--Hb_002686_270 Hb_009111_050 Hb_009111_050 Hb_001030_120--Hb_009111_050 Hb_000032_570 Hb_000032_570 Hb_001030_120--Hb_000032_570 Hb_005062_070 Hb_005062_070 Hb_001030_120--Hb_005062_070 Hb_028872_140 Hb_028872_140 Hb_001030_120--Hb_028872_140 Hb_000805_090 Hb_000805_090 Hb_003638_030--Hb_000805_090 Hb_026048_100 Hb_026048_100 Hb_003638_030--Hb_026048_100 Hb_162275_010 Hb_162275_010 Hb_003638_030--Hb_162275_010 Hb_000700_090 Hb_000700_090 Hb_003638_030--Hb_000700_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
55.2727 22.7529 7.48329 10.1598 70.3686 70.6379
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
48.1095 42.9447 55.0309 16.1614 4.54635

CAGE analysis