Hb_004204_190

Information

Type -
Description -
Location Contig4204: 126954-128818
Sequence    

Annotation

kegg
ID mbe:MBM_00587
description putative iron-sulfur cluster biosynthesis protein Isd11
nr
ID XP_007288476.1
description putative iron-sulfur cluster biosynthesis protein Isd11 [Marssonina brunnea f. sp. 'multigermtubi' MB_m1]
swissprot
ID -
description -
trembl
ID M0SRE5
description Uncharacterized protein OS=Musa acuminata subsp. malaccensis PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41542: 128344-128878
cDNA
(Sanger)
(ID:Location)		 035_G03.ab1: 128344-128876 , 051_C12.ab1: 128344-128876

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004204_190 0.0 - - putative iron-sulfur cluster biosynthesis protein Isd11 [Marssonina brunnea f. sp. 'multigermtubi' MB_m1]
2 Hb_005333_040 0.1336211932 - - PREDICTED: dnaJ homolog subfamily C member 5 [Prunus mume]
3 Hb_015456_020 0.1363494921 - - -
4 Hb_000300_380 0.1371843853 - - -
5 Hb_006452_060 0.1397719139 - - transferase, transferring glycosyl groups, putative [Ricinus communis]
6 Hb_001220_040 0.1425165198 transcription factor TF Family: ERF conserved hypothetical protein [Ricinus communis]
7 Hb_001214_030 0.1468887308 - - hypothetical protein POPTR_0006s10280g [Populus trichocarpa]
8 Hb_033080_010 0.1497344628 - - -
9 Hb_000291_200 0.154499874 - - -
10 Hb_007441_180 0.1548152041 - - conserved hypothetical protein [Ricinus communis]
11 Hb_002111_050 0.1585405309 - - PREDICTED: uncharacterized protein LOC105641242 [Jatropha curcas]
12 Hb_000436_050 0.1598186348 - - PREDICTED: INO80 complex subunit C [Jatropha curcas]
13 Hb_054301_010 0.1617256213 - - hypothetical protein EUTSA_v10006737mg [Eutrema salsugineum]
14 Hb_000866_300 0.1630138199 - - hypothetical protein CICLE_v10023145mg [Citrus clementina]
15 Hb_000190_060 0.1635914583 - - PREDICTED: uncharacterized protein LOC105644688 isoform X1 [Jatropha curcas]
16 Hb_001804_040 0.1661363807 - - conserved hypothetical protein [Ricinus communis]
17 Hb_005348_080 0.166790653 - - PREDICTED: oligouridylate-binding protein 1-like [Jatropha curcas]
18 Hb_052135_030 0.1676926359 - - PREDICTED: huntingtin-interacting protein K [Jatropha curcas]
19 Hb_004374_060 0.1701633041 - - hypothetical protein POPTR_0003s13140g [Populus trichocarpa]
20 Hb_000160_170 0.1718766141 - - hypothetical protein JCGZ_02506 [Jatropha curcas]

Gene co-expression network

sample Hb_004204_190 Hb_004204_190 Hb_005333_040 Hb_005333_040 Hb_004204_190--Hb_005333_040 Hb_015456_020 Hb_015456_020 Hb_004204_190--Hb_015456_020 Hb_000300_380 Hb_000300_380 Hb_004204_190--Hb_000300_380 Hb_006452_060 Hb_006452_060 Hb_004204_190--Hb_006452_060 Hb_001220_040 Hb_001220_040 Hb_004204_190--Hb_001220_040 Hb_001214_030 Hb_001214_030 Hb_004204_190--Hb_001214_030 Hb_033080_010 Hb_033080_010 Hb_005333_040--Hb_033080_010 Hb_006501_150 Hb_006501_150 Hb_005333_040--Hb_006501_150 Hb_000270_840 Hb_000270_840 Hb_005333_040--Hb_000270_840 Hb_000538_020 Hb_000538_020 Hb_005333_040--Hb_000538_020 Hb_000329_690 Hb_000329_690 Hb_005333_040--Hb_000329_690 Hb_004970_200 Hb_004970_200 Hb_005333_040--Hb_004970_200 Hb_015456_020--Hb_000300_380 Hb_015456_020--Hb_005333_040 Hb_001158_030 Hb_001158_030 Hb_015456_020--Hb_001158_030 Hb_000183_070 Hb_000183_070 Hb_015456_020--Hb_000183_070 Hb_000014_100 Hb_000014_100 Hb_015456_020--Hb_000014_100 Hb_000922_150 Hb_000922_150 Hb_000300_380--Hb_000922_150 Hb_017438_020 Hb_017438_020 Hb_000300_380--Hb_017438_020 Hb_000958_010 Hb_000958_010 Hb_000300_380--Hb_000958_010 Hb_000300_380--Hb_005333_040 Hb_006452_060--Hb_001220_040 Hb_000291_210 Hb_000291_210 Hb_006452_060--Hb_000291_210 Hb_030620_010 Hb_030620_010 Hb_006452_060--Hb_030620_010 Hb_000085_310 Hb_000085_310 Hb_006452_060--Hb_000085_310 Hb_030982_040 Hb_030982_040 Hb_006452_060--Hb_030982_040 Hb_000436_050 Hb_000436_050 Hb_006452_060--Hb_000436_050 Hb_005348_080 Hb_005348_080 Hb_001220_040--Hb_005348_080 Hb_180992_010 Hb_180992_010 Hb_001220_040--Hb_180992_010 Hb_001220_040--Hb_000085_310 Hb_000340_430 Hb_000340_430 Hb_001220_040--Hb_000340_430 Hb_002662_100 Hb_002662_100 Hb_001220_040--Hb_002662_100 Hb_000190_060 Hb_000190_060 Hb_001214_030--Hb_000190_060 Hb_042202_010 Hb_042202_010 Hb_001214_030--Hb_042202_010 Hb_002477_240 Hb_002477_240 Hb_001214_030--Hb_002477_240 Hb_003058_070 Hb_003058_070 Hb_001214_030--Hb_003058_070 Hb_000417_110 Hb_000417_110 Hb_001214_030--Hb_000417_110 Hb_003001_060 Hb_003001_060 Hb_001214_030--Hb_003001_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
27.7818 4.08546 3.73816 0.561818 61.9437 21.5294
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
39.6816 55.0607 20.2378 5.69671 8.98439

CAGE analysis