Hb_000008_230

Information

Type -
Description -
Location Contig8: 327120-328899
Sequence    

Annotation

kegg
ID pop:POPTR_0004s22120g
description hypothetical protein
nr
ID XP_006384908.1
description hypothetical protein POPTR_0004s22120g [Populus trichocarpa]
swissprot
ID Q9FGZ9
description Ubiquitin-like protein 5 OS=Arabidopsis thaliana GN=UBL5 PE=3 SV=1
trembl
ID U5GGV7
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0004s22120g PE=4 SV=1
Gene Ontology
ID GO:0005515
description ubiquitin-like protein 5

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58677: 329454-339770
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000008_230 0.0 - - hypothetical protein POPTR_0004s22120g [Populus trichocarpa]
2 Hb_008749_050 0.1400953565 - - PREDICTED: uncharacterized J domain-containing protein C4H3.01 [Jatropha curcas]
3 Hb_001769_020 0.1529366718 - - PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial-like [Jatropha curcas]
4 Hb_012340_020 0.1532624992 - - PREDICTED: putative pentatricopeptide repeat-containing protein At3g25060, mitochondrial [Jatropha curcas]
5 Hb_002344_090 0.1546496121 - - PREDICTED: uncharacterized protein LOC105637976 [Jatropha curcas]
6 Hb_035947_010 0.165088908 - - PREDICTED: serine/threonine-protein phosphatase 7 long form homolog [Elaeis guineensis]
7 Hb_002374_440 0.1659451917 - - conserved hypothetical protein [Ricinus communis]
8 Hb_085375_010 0.1671927533 - - protein with unknown function [Ricinus communis]
9 Hb_002918_310 0.1672322413 - - PREDICTED: dnaJ protein homolog 1-like [Jatropha curcas]
10 Hb_097433_010 0.1746501925 - - PREDICTED: TPR repeat-containing thioredoxin TDX [Jatropha curcas]
11 Hb_003688_200 0.179653119 - - conserved hypothetical protein [Ricinus communis]
12 Hb_002311_250 0.180171414 - - hypothetical protein JCGZ_18936 [Jatropha curcas]
13 Hb_010068_030 0.182220177 - - aconitase, putative [Ricinus communis]
14 Hb_001534_070 0.1864663073 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 38 [Eucalyptus grandis]
15 Hb_004374_050 0.1915742044 - - conserved hypothetical protein [Ricinus communis]
16 Hb_004712_110 0.1945592452 - - 30S ribosomal protein S10, putative [Ricinus communis]
17 Hb_000206_130 0.1995339445 - - unnamed protein product [Vitis vinifera]
18 Hb_003327_030 0.2008071207 - - Hsc70-interacting protein, putative [Ricinus communis]
19 Hb_000755_080 0.203174436 - - hypothetical protein RCOM_1016710 [Ricinus communis]
20 Hb_003751_060 0.2043896378 - - EARLY-RESPONSIVE TO DEHYDRATION 7 family protein [Populus trichocarpa]

Gene co-expression network

sample Hb_000008_230 Hb_000008_230 Hb_008749_050 Hb_008749_050 Hb_000008_230--Hb_008749_050 Hb_001769_020 Hb_001769_020 Hb_000008_230--Hb_001769_020 Hb_012340_020 Hb_012340_020 Hb_000008_230--Hb_012340_020 Hb_002344_090 Hb_002344_090 Hb_000008_230--Hb_002344_090 Hb_035947_010 Hb_035947_010 Hb_000008_230--Hb_035947_010 Hb_002374_440 Hb_002374_440 Hb_000008_230--Hb_002374_440 Hb_025194_030 Hb_025194_030 Hb_008749_050--Hb_025194_030 Hb_000140_370 Hb_000140_370 Hb_008749_050--Hb_000140_370 Hb_008749_050--Hb_012340_020 Hb_004846_180 Hb_004846_180 Hb_008749_050--Hb_004846_180 Hb_002918_310 Hb_002918_310 Hb_008749_050--Hb_002918_310 Hb_004374_050 Hb_004374_050 Hb_001769_020--Hb_004374_050 Hb_001769_020--Hb_002374_440 Hb_179511_010 Hb_179511_010 Hb_001769_020--Hb_179511_010 Hb_010068_030 Hb_010068_030 Hb_001769_020--Hb_010068_030 Hb_001769_020--Hb_012340_020 Hb_001534_070 Hb_001534_070 Hb_012340_020--Hb_001534_070 Hb_012340_020--Hb_002374_440 Hb_000206_130 Hb_000206_130 Hb_012340_020--Hb_000206_130 Hb_012340_020--Hb_010068_030 Hb_012340_020--Hb_002918_310 Hb_003688_200 Hb_003688_200 Hb_012340_020--Hb_003688_200 Hb_002344_090--Hb_012340_020 Hb_106321_030 Hb_106321_030 Hb_002344_090--Hb_106321_030 Hb_000122_250 Hb_000122_250 Hb_002344_090--Hb_000122_250 Hb_002344_090--Hb_010068_030 Hb_013394_060 Hb_013394_060 Hb_002344_090--Hb_013394_060 Hb_003327_030 Hb_003327_030 Hb_035947_010--Hb_003327_030 Hb_097433_010 Hb_097433_010 Hb_035947_010--Hb_097433_010 Hb_003751_060 Hb_003751_060 Hb_035947_010--Hb_003751_060 Hb_035947_010--Hb_002918_310 Hb_001083_030 Hb_001083_030 Hb_035947_010--Hb_001083_030 Hb_002387_020 Hb_002387_020 Hb_035947_010--Hb_002387_020 Hb_029388_040 Hb_029388_040 Hb_002374_440--Hb_029388_040 Hb_005228_100 Hb_005228_100 Hb_002374_440--Hb_005228_100 Hb_002374_440--Hb_004374_050 Hb_002374_440--Hb_003688_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
18.3841 32.6456 15.3321 9.92709 155.094 32.9756
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
21.4621 19.6895 16.3494 2.14428 6.46518

CAGE analysis