Hb_003688_200

Information

Type -
Description -
Location Contig3688: 125932-127367
Sequence    

Annotation

kegg
ID rcu:RCOM_1469690
description hypothetical protein
nr
ID XP_002514652.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RLN3
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1469690 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003688_200 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_010068_030 0.127382731 - - aconitase, putative [Ricinus communis]
3 Hb_002374_440 0.1347640771 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000120_570 0.1412503493 - - Mlo protein [Hevea brasiliensis]
5 Hb_003097_190 0.1433109295 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 3 [Jatropha curcas]
6 Hb_012340_020 0.1437324629 - - PREDICTED: putative pentatricopeptide repeat-containing protein At3g25060, mitochondrial [Jatropha curcas]
7 Hb_000755_080 0.1457014665 - - hypothetical protein RCOM_1016710 [Ricinus communis]
8 Hb_001534_070 0.1459492603 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 38 [Eucalyptus grandis]
9 Hb_000206_130 0.1494497177 - - unnamed protein product [Vitis vinifera]
10 Hb_006816_120 0.1514440981 - - Nicotianamine synthase, putative [Ricinus communis]
11 Hb_006501_060 0.1555643229 - - PREDICTED: lachrymatory-factor synthase-like [Jatropha curcas]
12 Hb_005895_040 0.1561798373 - - PREDICTED: tRNA threonylcarbamoyladenosine dehydratase [Jatropha curcas]
13 Hb_004567_100 0.1566378532 - - PREDICTED: uncharacterized protein LOC105644934 [Jatropha curcas]
14 Hb_000258_130 0.1611163809 - - -
15 Hb_012753_020 0.1623438394 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000613_100 0.1629963369 - - PREDICTED: long chain acyl-CoA synthetase 8 [Jatropha curcas]
17 Hb_000152_560 0.1638232763 - - hypothetical protein JCGZ_26236 [Jatropha curcas]
18 Hb_007747_060 0.1654629581 - - PREDICTED: mitochondrial fission protein ELM1 isoform X1 [Jatropha curcas]
19 Hb_017711_020 0.1655059047 - - PREDICTED: cysteine-rich repeat secretory protein 56 isoform X1 [Jatropha curcas]
20 Hb_188964_010 0.1655135743 - - maintenance of killer 16 (mak16) protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_003688_200 Hb_003688_200 Hb_010068_030 Hb_010068_030 Hb_003688_200--Hb_010068_030 Hb_002374_440 Hb_002374_440 Hb_003688_200--Hb_002374_440 Hb_000120_570 Hb_000120_570 Hb_003688_200--Hb_000120_570 Hb_003097_190 Hb_003097_190 Hb_003688_200--Hb_003097_190 Hb_012340_020 Hb_012340_020 Hb_003688_200--Hb_012340_020 Hb_000755_080 Hb_000755_080 Hb_003688_200--Hb_000755_080 Hb_010068_030--Hb_003097_190 Hb_000152_560 Hb_000152_560 Hb_010068_030--Hb_000152_560 Hb_000422_140 Hb_000422_140 Hb_010068_030--Hb_000422_140 Hb_002890_030 Hb_002890_030 Hb_010068_030--Hb_002890_030 Hb_002499_070 Hb_002499_070 Hb_010068_030--Hb_002499_070 Hb_000258_130 Hb_000258_130 Hb_010068_030--Hb_000258_130 Hb_029388_040 Hb_029388_040 Hb_002374_440--Hb_029388_040 Hb_005228_100 Hb_005228_100 Hb_002374_440--Hb_005228_100 Hb_002374_440--Hb_012340_020 Hb_004374_050 Hb_004374_050 Hb_002374_440--Hb_004374_050 Hb_001769_020 Hb_001769_020 Hb_002374_440--Hb_001769_020 Hb_001473_080 Hb_001473_080 Hb_000120_570--Hb_001473_080 Hb_001922_130 Hb_001922_130 Hb_000120_570--Hb_001922_130 Hb_001534_070 Hb_001534_070 Hb_000120_570--Hb_001534_070 Hb_009178_020 Hb_009178_020 Hb_000120_570--Hb_009178_020 Hb_000685_080 Hb_000685_080 Hb_000120_570--Hb_000685_080 Hb_004374_150 Hb_004374_150 Hb_000120_570--Hb_004374_150 Hb_012654_010 Hb_012654_010 Hb_003097_190--Hb_012654_010 Hb_003097_190--Hb_000152_560 Hb_001057_010 Hb_001057_010 Hb_003097_190--Hb_001057_010 Hb_003097_190--Hb_002890_030 Hb_000861_070 Hb_000861_070 Hb_003097_190--Hb_000861_070 Hb_012340_020--Hb_001534_070 Hb_000206_130 Hb_000206_130 Hb_012340_020--Hb_000206_130 Hb_012340_020--Hb_010068_030 Hb_002918_310 Hb_002918_310 Hb_012340_020--Hb_002918_310 Hb_000261_520 Hb_000261_520 Hb_000755_080--Hb_000261_520 Hb_000365_140 Hb_000365_140 Hb_000755_080--Hb_000365_140 Hb_005895_040 Hb_005895_040 Hb_000755_080--Hb_005895_040 Hb_004656_060 Hb_004656_060 Hb_000755_080--Hb_004656_060 Hb_000375_030 Hb_000375_030 Hb_000755_080--Hb_000375_030 Hb_000640_220 Hb_000640_220 Hb_000755_080--Hb_000640_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.18495 2.02903 0.763195 0.697514 6.51932 3.00726
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.27301 1.31207 0.512057 1.05255 0.213556

CAGE analysis