Hb_000206_130

Information

Type -
Description -
Location Contig206: 208403-220586
Sequence    

Annotation

kegg
ID dosa:Os03t0652000-02
description Os03g0652000; C2 domain containing protein.
nr
ID CBI40337.3
description unnamed protein product [Vitis vinifera]
swissprot
ID O43581
description Synaptotagmin-7 OS=Homo sapiens GN=SYT7 PE=1 SV=3
trembl
ID M0U6T1
description Uncharacterized protein OS=Musa acuminata subsp. malaccensis PE=4 SV=1
Gene Ontology
ID GO:0016021
description multiple c2 and transmembrane domain-containing protein 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21229: 217737-218496
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000206_130 0.0 - - unnamed protein product [Vitis vinifera]
2 Hb_012340_020 0.1278920205 - - PREDICTED: putative pentatricopeptide repeat-containing protein At3g25060, mitochondrial [Jatropha curcas]
3 Hb_001534_070 0.1491206276 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 38 [Eucalyptus grandis]
4 Hb_003688_200 0.1494497177 - - conserved hypothetical protein [Ricinus communis]
5 Hb_002374_440 0.1617344214 - - conserved hypothetical protein [Ricinus communis]
6 Hb_182807_020 0.1718380668 - - anthocyanidin 3-O-glucosyltransferase [Hevea brasiliensis]
7 Hb_006816_120 0.1846280956 - - Nicotianamine synthase, putative [Ricinus communis]
8 Hb_085375_010 0.1920171672 - - protein with unknown function [Ricinus communis]
9 Hb_029388_040 0.1967659392 - - PREDICTED: GEM-like protein 5 [Jatropha curcas]
10 Hb_020805_010 0.1977065807 - - protein with unknown function [Ricinus communis]
11 Hb_008749_050 0.1984680054 - - PREDICTED: uncharacterized J domain-containing protein C4H3.01 [Jatropha curcas]
12 Hb_025194_030 0.1986916995 - - PREDICTED: BAG family molecular chaperone regulator 6-like [Jatropha curcas]
13 Hb_000720_070 0.1994435454 transcription factor TF Family: HSF hypothetical protein JCGZ_20639 [Jatropha curcas]
14 Hb_000008_230 0.1995339445 - - hypothetical protein POPTR_0004s22120g [Populus trichocarpa]
15 Hb_000001_160 0.1998088528 - - PREDICTED: probable glutamate carboxypeptidase 2 isoform X2 [Jatropha curcas]
16 Hb_000212_130 0.1998697186 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000120_570 0.2002254772 - - Mlo protein [Hevea brasiliensis]
18 Hb_006501_060 0.2011611648 - - PREDICTED: lachrymatory-factor synthase-like [Jatropha curcas]
19 Hb_001946_360 0.2039684753 - - PREDICTED: nuclear pore complex protein NUP88 [Jatropha curcas]
20 Hb_000739_290 0.2040182775 - - cytochrome P450, putative [Ricinus communis]

Gene co-expression network

sample Hb_000206_130 Hb_000206_130 Hb_012340_020 Hb_012340_020 Hb_000206_130--Hb_012340_020 Hb_001534_070 Hb_001534_070 Hb_000206_130--Hb_001534_070 Hb_003688_200 Hb_003688_200 Hb_000206_130--Hb_003688_200 Hb_002374_440 Hb_002374_440 Hb_000206_130--Hb_002374_440 Hb_182807_020 Hb_182807_020 Hb_000206_130--Hb_182807_020 Hb_006816_120 Hb_006816_120 Hb_000206_130--Hb_006816_120 Hb_012340_020--Hb_001534_070 Hb_012340_020--Hb_002374_440 Hb_010068_030 Hb_010068_030 Hb_012340_020--Hb_010068_030 Hb_002918_310 Hb_002918_310 Hb_012340_020--Hb_002918_310 Hb_012340_020--Hb_003688_200 Hb_000120_570 Hb_000120_570 Hb_001534_070--Hb_000120_570 Hb_000720_070 Hb_000720_070 Hb_001534_070--Hb_000720_070 Hb_001534_070--Hb_010068_030 Hb_001534_070--Hb_002918_310 Hb_006501_060 Hb_006501_060 Hb_001534_070--Hb_006501_060 Hb_003688_200--Hb_010068_030 Hb_003688_200--Hb_002374_440 Hb_003688_200--Hb_000120_570 Hb_003097_190 Hb_003097_190 Hb_003688_200--Hb_003097_190 Hb_000755_080 Hb_000755_080 Hb_003688_200--Hb_000755_080 Hb_029388_040 Hb_029388_040 Hb_002374_440--Hb_029388_040 Hb_005228_100 Hb_005228_100 Hb_002374_440--Hb_005228_100 Hb_004374_050 Hb_004374_050 Hb_002374_440--Hb_004374_050 Hb_001769_020 Hb_001769_020 Hb_002374_440--Hb_001769_020 Hb_184326_010 Hb_184326_010 Hb_182807_020--Hb_184326_010 Hb_004846_180 Hb_004846_180 Hb_182807_020--Hb_004846_180 Hb_000205_070 Hb_000205_070 Hb_182807_020--Hb_000205_070 Hb_006745_020 Hb_006745_020 Hb_182807_020--Hb_006745_020 Hb_000853_290 Hb_000853_290 Hb_182807_020--Hb_000853_290 Hb_003236_010 Hb_003236_010 Hb_006816_120--Hb_003236_010 Hb_006882_010 Hb_006882_010 Hb_006816_120--Hb_006882_010 Hb_017711_020 Hb_017711_020 Hb_006816_120--Hb_017711_020 Hb_000258_130 Hb_000258_130 Hb_006816_120--Hb_000258_130 Hb_000152_560 Hb_000152_560 Hb_006816_120--Hb_000152_560 Hb_000940_040 Hb_000940_040 Hb_006816_120--Hb_000940_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.08065 15.5336 3.22566 2.99119 55.3885 21.8557
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.5493 3.16626 2.81901 5.68895 0.87735

CAGE analysis