Hb_017711_020

Information

Type -
Description -
Location Contig17711: 4765-6100
Sequence    

Annotation

kegg
ID rcu:RCOM_0542350
description DUF26 domain-containing protein 2 precursor, putative
nr
ID XP_012085236.1
description PREDICTED: cysteine-rich repeat secretory protein 56 isoform X1 [Jatropha curcas]
swissprot
ID Q8GXV7
description Cysteine-rich repeat secretory protein 56 OS=Arabidopsis thaliana GN=CRRSP56 PE=1 SV=2
trembl
ID A0A067K2H9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17633 PE=4 SV=1
Gene Ontology
ID GO:0009505
description cysteine-rich repeat secretory protein 56

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17011: 4770-5476 , PASA_asmbl_17012: 5497-6033
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_017711_020 0.0 - - PREDICTED: cysteine-rich repeat secretory protein 56 isoform X1 [Jatropha curcas]
2 Hb_000270_140 0.0998781799 - - PREDICTED: uncharacterized protein LOC105640478 isoform X1 [Jatropha curcas]
3 Hb_004567_100 0.1088010435 - - PREDICTED: uncharacterized protein LOC105644934 [Jatropha curcas]
4 Hb_000003_790 0.1211472283 - - PREDICTED: nuclear poly(A) polymerase 4-like [Jatropha curcas]
5 Hb_000940_040 0.1215333553 - - PREDICTED: protein XAP5 CIRCADIAN TIMEKEEPER isoform X1 [Jatropha curcas]
6 Hb_000152_560 0.1231120969 - - hypothetical protein JCGZ_26236 [Jatropha curcas]
7 Hb_007441_070 0.1292232304 - - hypothetical protein PRUPE_ppa004494mg [Prunus persica]
8 Hb_000755_080 0.1298695186 - - hypothetical protein RCOM_1016710 [Ricinus communis]
9 Hb_005228_080 0.1299495459 - - PREDICTED: cleavage and polyadenylation specificity factor subunit 3-I [Jatropha curcas]
10 Hb_000613_100 0.1311635798 - - PREDICTED: long chain acyl-CoA synthetase 8 [Jatropha curcas]
11 Hb_000906_060 0.1335960869 - - PREDICTED: putative pentatricopeptide repeat-containing protein At3g08820 [Populus euphratica]
12 Hb_188964_010 0.1336865473 - - maintenance of killer 16 (mak16) protein, putative [Ricinus communis]
13 Hb_006816_120 0.1341057602 - - Nicotianamine synthase, putative [Ricinus communis]
14 Hb_004767_090 0.1372353817 - - Aspartic proteinase Asp1 precursor, putative [Ricinus communis]
15 Hb_000261_520 0.1390123785 - - PREDICTED: uncharacterized protein LOC105633192 [Jatropha curcas]
16 Hb_003236_010 0.1400523974 - - PREDICTED: uncharacterized protein LOC105635957 [Jatropha curcas]
17 Hb_003097_190 0.1404284448 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 3 [Jatropha curcas]
18 Hb_010068_030 0.1414412678 - - aconitase, putative [Ricinus communis]
19 Hb_009421_030 0.144365701 - - PREDICTED: uncharacterized protein LOC105639700 [Jatropha curcas]
20 Hb_000037_110 0.1450367793 - - PREDICTED: cation/H(+) antiporter 18-like [Populus euphratica]

Gene co-expression network

sample Hb_017711_020 Hb_017711_020 Hb_000270_140 Hb_000270_140 Hb_017711_020--Hb_000270_140 Hb_004567_100 Hb_004567_100 Hb_017711_020--Hb_004567_100 Hb_000003_790 Hb_000003_790 Hb_017711_020--Hb_000003_790 Hb_000940_040 Hb_000940_040 Hb_017711_020--Hb_000940_040 Hb_000152_560 Hb_000152_560 Hb_017711_020--Hb_000152_560 Hb_007441_070 Hb_007441_070 Hb_017711_020--Hb_007441_070 Hb_000906_060 Hb_000906_060 Hb_000270_140--Hb_000906_060 Hb_005214_160 Hb_005214_160 Hb_000270_140--Hb_005214_160 Hb_003097_190 Hb_003097_190 Hb_000270_140--Hb_003097_190 Hb_000422_140 Hb_000422_140 Hb_000270_140--Hb_000422_140 Hb_000270_140--Hb_004567_100 Hb_004567_100--Hb_005214_160 Hb_002701_080 Hb_002701_080 Hb_004567_100--Hb_002701_080 Hb_012654_010 Hb_012654_010 Hb_004567_100--Hb_012654_010 Hb_000059_150 Hb_000059_150 Hb_004567_100--Hb_000059_150 Hb_003506_080 Hb_003506_080 Hb_004567_100--Hb_003506_080 Hb_000134_360 Hb_000134_360 Hb_000003_790--Hb_000134_360 Hb_000317_440 Hb_000317_440 Hb_000003_790--Hb_000317_440 Hb_001975_020 Hb_001975_020 Hb_000003_790--Hb_001975_020 Hb_008528_010 Hb_008528_010 Hb_000003_790--Hb_008528_010 Hb_002235_320 Hb_002235_320 Hb_000003_790--Hb_002235_320 Hb_002725_070 Hb_002725_070 Hb_000003_790--Hb_002725_070 Hb_000940_040--Hb_007441_070 Hb_019871_020 Hb_019871_020 Hb_000940_040--Hb_019871_020 Hb_011644_020 Hb_011644_020 Hb_000940_040--Hb_011644_020 Hb_004656_060 Hb_004656_060 Hb_000940_040--Hb_004656_060 Hb_000940_040--Hb_000270_140 Hb_000608_340 Hb_000608_340 Hb_000940_040--Hb_000608_340 Hb_000152_560--Hb_003097_190 Hb_000614_080 Hb_000614_080 Hb_000152_560--Hb_000614_080 Hb_000152_890 Hb_000152_890 Hb_000152_560--Hb_000152_890 Hb_010068_030 Hb_010068_030 Hb_000152_560--Hb_010068_030 Hb_029866_130 Hb_029866_130 Hb_000152_560--Hb_029866_130 Hb_001057_010 Hb_001057_010 Hb_000152_560--Hb_001057_010 Hb_007441_070--Hb_011644_020 Hb_007441_070--Hb_019871_020 Hb_001582_030 Hb_001582_030 Hb_007441_070--Hb_001582_030 Hb_001357_190 Hb_001357_190 Hb_007441_070--Hb_001357_190 Hb_007441_070--Hb_000152_890
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.7726 10.2315 2.11858 5.14399 35.3207 23.9082
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.32692 4.09325 8.69234 4.325 4.47168

CAGE analysis