Hb_000270_140

Information

Type -
Description -
Location Contig270: 130654-140903
Sequence    

Annotation

kegg
ID rcu:RCOM_1513330
description hypothetical protein
nr
ID XP_012080189.1
description PREDICTED: uncharacterized protein LOC105640478 isoform X1 [Jatropha curcas]
swissprot
ID Q8BL06
description Inactive ubiquitin carboxyl-terminal hydrolase 54 OS=Mus musculus GN=Usp54 PE=2 SV=2
trembl
ID A0A067K4P4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11567 PE=4 SV=1
Gene Ontology
ID GO:0036459
description ubiquitin carboxyl-terminal hydrolase-related protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28165: 130795-135377 , PASA_asmbl_28166: 134634-141109 , PASA_asmbl_28167: 136709-141109
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000270_140 0.0 - - PREDICTED: uncharacterized protein LOC105640478 isoform X1 [Jatropha curcas]
2 Hb_000906_060 0.0955727368 - - PREDICTED: putative pentatricopeptide repeat-containing protein At3g08820 [Populus euphratica]
3 Hb_017711_020 0.0998781799 - - PREDICTED: cysteine-rich repeat secretory protein 56 isoform X1 [Jatropha curcas]
4 Hb_005214_160 0.1048896266 - - PREDICTED: heat shock 70 kDa protein, mitochondrial [Jatropha curcas]
5 Hb_003097_190 0.1052913657 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 3 [Jatropha curcas]
6 Hb_000422_140 0.1062167021 - - PREDICTED: apoptosis-inducing factor 2-like isoform X1 [Jatropha curcas]
7 Hb_004567_100 0.1066687098 - - PREDICTED: uncharacterized protein LOC105644934 [Jatropha curcas]
8 Hb_012654_010 0.1076386054 transcription factor TF Family: MYB-related PREDICTED: uncharacterized protein LOC105629849 [Jatropha curcas]
9 Hb_000940_040 0.1091209573 - - PREDICTED: protein XAP5 CIRCADIAN TIMEKEEPER isoform X1 [Jatropha curcas]
10 Hb_000107_100 0.1102460368 - - hypothetical protein JCGZ_16208 [Jatropha curcas]
11 Hb_000003_790 0.111512175 - - PREDICTED: nuclear poly(A) polymerase 4-like [Jatropha curcas]
12 Hb_000977_180 0.1145916022 - - PREDICTED: splicing factor U2AF-associated protein 2 isoform X1 [Jatropha curcas]
13 Hb_000152_560 0.1170173367 - - hypothetical protein JCGZ_26236 [Jatropha curcas]
14 Hb_017168_010 0.1177396051 - - conserved hypothetical protein [Ricinus communis]
15 Hb_004656_060 0.1185694453 - - PREDICTED: uncharacterized protein LOC105634581 [Jatropha curcas]
16 Hb_000139_250 0.1203865582 - - PREDICTED: putative methyltransferase C9orf114 [Jatropha curcas]
17 Hb_002942_220 0.120531668 - - PREDICTED: uncharacterized protein LOC105648740 [Jatropha curcas]
18 Hb_000946_120 0.1218242141 - - DNA binding protein, putative [Ricinus communis]
19 Hb_003406_040 0.122142789 - - PREDICTED: ATP-dependent RNA helicase DHX36 [Jatropha curcas]
20 Hb_001504_160 0.1230951202 - - PREDICTED: nuclear pore complex protein NUP96 [Jatropha curcas]

Gene co-expression network

sample Hb_000270_140 Hb_000270_140 Hb_000906_060 Hb_000906_060 Hb_000270_140--Hb_000906_060 Hb_017711_020 Hb_017711_020 Hb_000270_140--Hb_017711_020 Hb_005214_160 Hb_005214_160 Hb_000270_140--Hb_005214_160 Hb_003097_190 Hb_003097_190 Hb_000270_140--Hb_003097_190 Hb_000422_140 Hb_000422_140 Hb_000270_140--Hb_000422_140 Hb_004567_100 Hb_004567_100 Hb_000270_140--Hb_004567_100 Hb_004724_360 Hb_004724_360 Hb_000906_060--Hb_004724_360 Hb_001504_160 Hb_001504_160 Hb_000906_060--Hb_001504_160 Hb_012016_020 Hb_012016_020 Hb_000906_060--Hb_012016_020 Hb_012654_010 Hb_012654_010 Hb_000906_060--Hb_012654_010 Hb_002341_030 Hb_002341_030 Hb_000906_060--Hb_002341_030 Hb_001575_080 Hb_001575_080 Hb_000906_060--Hb_001575_080 Hb_017711_020--Hb_004567_100 Hb_000003_790 Hb_000003_790 Hb_017711_020--Hb_000003_790 Hb_000940_040 Hb_000940_040 Hb_017711_020--Hb_000940_040 Hb_000152_560 Hb_000152_560 Hb_017711_020--Hb_000152_560 Hb_007441_070 Hb_007441_070 Hb_017711_020--Hb_007441_070 Hb_005214_160--Hb_012654_010 Hb_000977_180 Hb_000977_180 Hb_005214_160--Hb_000977_180 Hb_009620_040 Hb_009620_040 Hb_005214_160--Hb_009620_040 Hb_007364_010 Hb_007364_010 Hb_005214_160--Hb_007364_010 Hb_005214_160--Hb_004567_100 Hb_002097_090 Hb_002097_090 Hb_005214_160--Hb_002097_090 Hb_010068_030 Hb_010068_030 Hb_003097_190--Hb_010068_030 Hb_003097_190--Hb_012654_010 Hb_003097_190--Hb_000152_560 Hb_001057_010 Hb_001057_010 Hb_003097_190--Hb_001057_010 Hb_002890_030 Hb_002890_030 Hb_003097_190--Hb_002890_030 Hb_000861_070 Hb_000861_070 Hb_003097_190--Hb_000861_070 Hb_005895_040 Hb_005895_040 Hb_000422_140--Hb_005895_040 Hb_144787_030 Hb_144787_030 Hb_000422_140--Hb_144787_030 Hb_004656_060 Hb_004656_060 Hb_000422_140--Hb_004656_060 Hb_000946_120 Hb_000946_120 Hb_000422_140--Hb_000946_120 Hb_000365_140 Hb_000365_140 Hb_000422_140--Hb_000365_140 Hb_002477_130 Hb_002477_130 Hb_000422_140--Hb_002477_130 Hb_002701_080 Hb_002701_080 Hb_004567_100--Hb_002701_080 Hb_004567_100--Hb_012654_010 Hb_000059_150 Hb_000059_150 Hb_004567_100--Hb_000059_150 Hb_003506_080 Hb_003506_080 Hb_004567_100--Hb_003506_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
29.1164 24.1874 8.97282 6.22306 86.1498 53.3108
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
23.2891 16.3367 28.595 14.7321 16.3084

CAGE analysis