Hb_006501_060

Information

Type -
Description -
Location Contig6501: 47728-48240
Sequence    

Annotation

kegg
ID egr:104437794
description lachrymatory-factor synthase-like
nr
ID XP_012077519.1
description PREDICTED: lachrymatory-factor synthase-like [Jatropha curcas]
swissprot
ID P59082
description Lachrymatory-factor synthase OS=Allium cepa GN=LFS PE=1 SV=1
trembl
ID A0A067KN99
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07301 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006501_060 0.0 - - PREDICTED: lachrymatory-factor synthase-like [Jatropha curcas]
2 Hb_000120_570 0.1232578028 - - Mlo protein [Hevea brasiliensis]
3 Hb_002609_010 0.1325557897 - - PREDICTED: uncharacterized protein LOC105630866 [Jatropha curcas]
4 Hb_001247_230 0.1338876053 - - nucleic acid binding protein, putative [Ricinus communis]
5 Hb_010883_080 0.1341829881 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase ASHR1 isoform X1 [Jatropha curcas]
6 Hb_001534_070 0.134299531 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 38 [Eucalyptus grandis]
7 Hb_000116_570 0.1371549843 transcription factor TF Family: ARID PREDICTED: AT-rich interactive domain-containing protein 5-like [Jatropha curcas]
8 Hb_000016_280 0.1389721205 - - Arginine/serine-rich splicing factor 35 [Theobroma cacao]
9 Hb_000685_080 0.1433585138 - - protein binding protein, putative [Ricinus communis]
10 Hb_002977_010 0.1459084151 - - PREDICTED: F-box protein GID2 [Jatropha curcas]
11 Hb_000953_030 0.1462370353 transcription factor TF Family: HSF DNA binding protein, putative [Ricinus communis]
12 Hb_003349_010 0.1475127599 desease resistance Gene Name: NB-ARC hypothetical protein CICLE_v10023911mg [Citrus clementina]
13 Hb_000720_070 0.1476442644 transcription factor TF Family: HSF hypothetical protein JCGZ_20639 [Jatropha curcas]
14 Hb_148209_020 0.1492167516 - - PREDICTED: SWI/SNF complex subunit SWI3D isoform X1 [Jatropha curcas]
15 Hb_001922_130 0.150504694 - - hypothetical protein PHAVU_002G294300g [Phaseolus vulgaris]
16 Hb_032202_240 0.1510267314 - - PREDICTED: F-box protein At4g00755 [Jatropha curcas]
17 Hb_009646_050 0.1523417092 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000390_220 0.1531921437 - - PREDICTED: uncharacterized protein LOC100244219 [Vitis vinifera]
19 Hb_002849_080 0.1534564764 - - PREDICTED: mitogen-activated protein kinase homolog MMK2 [Jatropha curcas]
20 Hb_003688_200 0.1555643229 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_006501_060 Hb_006501_060 Hb_000120_570 Hb_000120_570 Hb_006501_060--Hb_000120_570 Hb_002609_010 Hb_002609_010 Hb_006501_060--Hb_002609_010 Hb_001247_230 Hb_001247_230 Hb_006501_060--Hb_001247_230 Hb_010883_080 Hb_010883_080 Hb_006501_060--Hb_010883_080 Hb_001534_070 Hb_001534_070 Hb_006501_060--Hb_001534_070 Hb_000116_570 Hb_000116_570 Hb_006501_060--Hb_000116_570 Hb_001473_080 Hb_001473_080 Hb_000120_570--Hb_001473_080 Hb_001922_130 Hb_001922_130 Hb_000120_570--Hb_001922_130 Hb_000120_570--Hb_001534_070 Hb_009178_020 Hb_009178_020 Hb_000120_570--Hb_009178_020 Hb_000685_080 Hb_000685_080 Hb_000120_570--Hb_000685_080 Hb_004374_150 Hb_004374_150 Hb_000120_570--Hb_004374_150 Hb_002849_080 Hb_002849_080 Hb_002609_010--Hb_002849_080 Hb_148209_020 Hb_148209_020 Hb_002609_010--Hb_148209_020 Hb_006316_070 Hb_006316_070 Hb_002609_010--Hb_006316_070 Hb_000413_170 Hb_000413_170 Hb_002609_010--Hb_000413_170 Hb_002609_010--Hb_001247_230 Hb_000265_250 Hb_000265_250 Hb_002609_010--Hb_000265_250 Hb_001999_250 Hb_001999_250 Hb_001247_230--Hb_001999_250 Hb_001247_230--Hb_002849_080 Hb_001247_230--Hb_148209_020 Hb_001247_230--Hb_000265_250 Hb_001247_230--Hb_000116_570 Hb_010883_080--Hb_000116_570 Hb_010883_080--Hb_001473_080 Hb_000016_280 Hb_000016_280 Hb_010883_080--Hb_000016_280 Hb_010883_080--Hb_000685_080 Hb_010883_080--Hb_001922_130 Hb_000186_260 Hb_000186_260 Hb_010883_080--Hb_000186_260 Hb_012340_020 Hb_012340_020 Hb_001534_070--Hb_012340_020 Hb_000720_070 Hb_000720_070 Hb_001534_070--Hb_000720_070 Hb_010068_030 Hb_010068_030 Hb_001534_070--Hb_010068_030 Hb_002918_310 Hb_002918_310 Hb_001534_070--Hb_002918_310 Hb_000116_570--Hb_000016_280 Hb_000093_130 Hb_000093_130 Hb_000116_570--Hb_000093_130 Hb_000116_570--Hb_000685_080 Hb_001227_110 Hb_001227_110 Hb_000116_570--Hb_001227_110 Hb_009646_050 Hb_009646_050 Hb_000116_570--Hb_009646_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
30.8624 49.6396 12.2048 7.99229 73.6421 39.7718
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
21.3666 9.40463 7.57687 9.39499 1.33076

CAGE analysis