Hb_005228_100

Information

Type -
Description -
Location Contig5228: 97312-97962
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46885: 97382-97980
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005228_100 0.0 - - -
2 Hb_002374_440 0.1085800884 - - conserved hypothetical protein [Ricinus communis]
3 Hb_029388_040 0.1172022562 - - PREDICTED: GEM-like protein 5 [Jatropha curcas]
4 Hb_000771_160 0.1285551291 - - PREDICTED: abscisic acid receptor PYL8 [Jatropha curcas]
5 Hb_011671_330 0.1300090834 transcription factor TF Family: MYB-related PREDICTED: protein REVEILLE 4 [Jatropha curcas]
6 Hb_004374_050 0.1307383091 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000739_290 0.1406197745 - - cytochrome P450, putative [Ricinus communis]
8 Hb_000152_560 0.1411631234 - - hypothetical protein JCGZ_26236 [Jatropha curcas]
9 Hb_006478_110 0.1425507163 - - type I inositol polyphosphate 5-phosphatase, putative [Ricinus communis]
10 Hb_029866_130 0.1494514918 - - hypothetical protein JCGZ_00035 [Jatropha curcas]
11 Hb_002405_020 0.1501153095 desease resistance Gene Name: NB-ARC conserved hypothetical protein [Ricinus communis]
12 Hb_003097_190 0.1513566573 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 3 [Jatropha curcas]
13 Hb_010068_030 0.1530718627 - - aconitase, putative [Ricinus communis]
14 Hb_005410_010 0.1545597198 transcription factor TF Family: HSF hypothetical protein JCGZ_07655 [Jatropha curcas]
15 Hb_000753_210 0.1553610849 - - l-asparaginase, putative [Ricinus communis]
16 Hb_001341_040 0.1583092884 - - hypothetical protein JCGZ_05578 [Jatropha curcas]
17 Hb_027556_010 0.1587535873 - - -
18 Hb_001946_360 0.1588859832 - - PREDICTED: nuclear pore complex protein NUP88 [Jatropha curcas]
19 Hb_000413_130 0.159233883 - - PREDICTED: uncharacterized protein LOC105649409 [Jatropha curcas]
20 Hb_000258_130 0.1598653213 - - -

Gene co-expression network

sample Hb_005228_100 Hb_005228_100 Hb_002374_440 Hb_002374_440 Hb_005228_100--Hb_002374_440 Hb_029388_040 Hb_029388_040 Hb_005228_100--Hb_029388_040 Hb_000771_160 Hb_000771_160 Hb_005228_100--Hb_000771_160 Hb_011671_330 Hb_011671_330 Hb_005228_100--Hb_011671_330 Hb_004374_050 Hb_004374_050 Hb_005228_100--Hb_004374_050 Hb_000739_290 Hb_000739_290 Hb_005228_100--Hb_000739_290 Hb_002374_440--Hb_029388_040 Hb_012340_020 Hb_012340_020 Hb_002374_440--Hb_012340_020 Hb_002374_440--Hb_004374_050 Hb_001769_020 Hb_001769_020 Hb_002374_440--Hb_001769_020 Hb_003688_200 Hb_003688_200 Hb_002374_440--Hb_003688_200 Hb_029388_040--Hb_012340_020 Hb_106321_030 Hb_106321_030 Hb_029388_040--Hb_106321_030 Hb_000152_560 Hb_000152_560 Hb_029388_040--Hb_000152_560 Hb_002168_020 Hb_002168_020 Hb_029388_040--Hb_002168_020 Hb_002405_020 Hb_002405_020 Hb_000771_160--Hb_002405_020 Hb_113216_010 Hb_113216_010 Hb_000771_160--Hb_113216_010 Hb_004669_040 Hb_004669_040 Hb_000771_160--Hb_004669_040 Hb_000185_090 Hb_000185_090 Hb_000771_160--Hb_000185_090 Hb_001582_030 Hb_001582_030 Hb_000771_160--Hb_001582_030 Hb_009615_110 Hb_009615_110 Hb_000771_160--Hb_009615_110 Hb_006478_110 Hb_006478_110 Hb_011671_330--Hb_006478_110 Hb_000413_130 Hb_000413_130 Hb_011671_330--Hb_000413_130 Hb_029866_130 Hb_029866_130 Hb_011671_330--Hb_029866_130 Hb_029281_010 Hb_029281_010 Hb_011671_330--Hb_029281_010 Hb_001633_110 Hb_001633_110 Hb_011671_330--Hb_001633_110 Hb_004931_040 Hb_004931_040 Hb_011671_330--Hb_004931_040 Hb_004374_050--Hb_001769_020 Hb_000258_130 Hb_000258_130 Hb_004374_050--Hb_000258_130 Hb_010068_030 Hb_010068_030 Hb_004374_050--Hb_010068_030 Hb_004645_040 Hb_004645_040 Hb_004374_050--Hb_004645_040 Hb_000753_210 Hb_000753_210 Hb_000739_290--Hb_000753_210 Hb_000739_290--Hb_029388_040 Hb_000739_290--Hb_002374_440 Hb_000212_130 Hb_000212_130 Hb_000739_290--Hb_000212_130 Hb_000739_290--Hb_000771_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
45.3326 39.7948 3.98498 2.25867 133.177 67.3334
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
37.192 22.7917 22.7251 14.3062 3.04848

CAGE analysis