Hb_035947_010

Information

Type -
Description -
Location Contig35947: 15-962
Sequence    

Annotation

kegg
ID cmo:103503282
description serine/threonine-protein phosphatase 7 long form homolog
nr
ID XP_010942698.1
description PREDICTED: serine/threonine-protein phosphatase 7 long form homolog [Elaeis guineensis]
swissprot
ID Q9LNG5
description Serine/threonine-protein phosphatase 7 long form homolog OS=Arabidopsis thaliana GN=At1g48120 PE=2 SV=1
trembl
ID A5BJW1
description Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_008825 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_035947_010 0.0 - - PREDICTED: serine/threonine-protein phosphatase 7 long form homolog [Elaeis guineensis]
2 Hb_003327_030 0.1034460404 - - Hsc70-interacting protein, putative [Ricinus communis]
3 Hb_097433_010 0.1244658522 - - PREDICTED: TPR repeat-containing thioredoxin TDX [Jatropha curcas]
4 Hb_003751_060 0.1297384431 - - EARLY-RESPONSIVE TO DEHYDRATION 7 family protein [Populus trichocarpa]
5 Hb_002918_310 0.143447168 - - PREDICTED: dnaJ protein homolog 1-like [Jatropha curcas]
6 Hb_001083_030 0.1511127052 - - PREDICTED: probable E3 ubiquitin ligase complex SCF subunit sconB [Jatropha curcas]
7 Hb_002387_020 0.1538892603 - - PREDICTED: serine/threonine-protein phosphatase 7 long form homolog [Elaeis guineensis]
8 Hb_009558_040 0.1571214113 transcription factor TF Family: MYB hypothetical protein PHAVU_008G102000g [Phaseolus vulgaris]
9 Hb_000406_040 0.1610410986 - - PREDICTED: LOW QUALITY PROTEIN: FRIGIDA-like protein 5 [Jatropha curcas]
10 Hb_000008_230 0.165088908 - - hypothetical protein POPTR_0004s22120g [Populus trichocarpa]
11 Hb_001534_070 0.1703463533 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 38 [Eucalyptus grandis]
12 Hb_002965_030 0.1727220989 - - PREDICTED: uncharacterized protein LOC105643493 [Jatropha curcas]
13 Hb_013394_060 0.1731509321 - - PREDICTED: IST1-like protein isoform X1 [Jatropha curcas]
14 Hb_004512_020 0.1732944448 - - PREDICTED: tetratricopeptide repeat protein 1 [Jatropha curcas]
15 Hb_000755_080 0.1768730418 - - hypothetical protein RCOM_1016710 [Ricinus communis]
16 Hb_001433_020 0.1783506331 - - PREDICTED: bidirectional sugar transporter SWEET16-like [Jatropha curcas]
17 Hb_156144_030 0.1789121771 - - hypothetical protein RCOM_0187400 [Ricinus communis]
18 Hb_000365_140 0.1808209735 - - PREDICTED: ethanolamine-phosphate cytidylyltransferase [Jatropha curcas]
19 Hb_000720_070 0.1821758245 transcription factor TF Family: HSF hypothetical protein JCGZ_20639 [Jatropha curcas]
20 Hb_003097_190 0.1828666843 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 3 [Jatropha curcas]

Gene co-expression network

sample Hb_035947_010 Hb_035947_010 Hb_003327_030 Hb_003327_030 Hb_035947_010--Hb_003327_030 Hb_097433_010 Hb_097433_010 Hb_035947_010--Hb_097433_010 Hb_003751_060 Hb_003751_060 Hb_035947_010--Hb_003751_060 Hb_002918_310 Hb_002918_310 Hb_035947_010--Hb_002918_310 Hb_001083_030 Hb_001083_030 Hb_035947_010--Hb_001083_030 Hb_002387_020 Hb_002387_020 Hb_035947_010--Hb_002387_020 Hb_003327_030--Hb_097433_010 Hb_002814_120 Hb_002814_120 Hb_003327_030--Hb_002814_120 Hb_000406_040 Hb_000406_040 Hb_003327_030--Hb_000406_040 Hb_004635_130 Hb_004635_130 Hb_003327_030--Hb_004635_130 Hb_003327_030--Hb_002918_310 Hb_085375_010 Hb_085375_010 Hb_097433_010--Hb_085375_010 Hb_097433_010--Hb_002918_310 Hb_097433_010--Hb_004635_130 Hb_097433_010--Hb_002814_120 Hb_004512_020 Hb_004512_020 Hb_003751_060--Hb_004512_020 Hb_001754_240 Hb_001754_240 Hb_003751_060--Hb_001754_240 Hb_003097_190 Hb_003097_190 Hb_003751_060--Hb_003097_190 Hb_000933_150 Hb_000933_150 Hb_003751_060--Hb_000933_150 Hb_003751_060--Hb_002387_020 Hb_000720_070 Hb_000720_070 Hb_002918_310--Hb_000720_070 Hb_001534_070 Hb_001534_070 Hb_002918_310--Hb_001534_070 Hb_012340_020 Hb_012340_020 Hb_002918_310--Hb_012340_020 Hb_002965_030 Hb_002965_030 Hb_002918_310--Hb_002965_030 Hb_000152_560 Hb_000152_560 Hb_002918_310--Hb_000152_560 Hb_025669_020 Hb_025669_020 Hb_001083_030--Hb_025669_020 Hb_102129_070 Hb_102129_070 Hb_001083_030--Hb_102129_070 Hb_000946_120 Hb_000946_120 Hb_001083_030--Hb_000946_120 Hb_000032_490 Hb_000032_490 Hb_001083_030--Hb_000032_490 Hb_000365_140 Hb_000365_140 Hb_001083_030--Hb_000365_140 Hb_000107_530 Hb_000107_530 Hb_001083_030--Hb_000107_530 Hb_001452_140 Hb_001452_140 Hb_002387_020--Hb_001452_140 Hb_002387_020--Hb_000406_040 Hb_000487_100 Hb_000487_100 Hb_002387_020--Hb_000487_100 Hb_003878_120 Hb_003878_120 Hb_002387_020--Hb_003878_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.4633 2.44135 1.69522 0.596718 8.31443 1.53432
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.46648 0.720424 1.90753 0.559278 0.704117

CAGE analysis