Hb_004635_130

Information

Type -
Description -
Location Contig4635: 100579-103229
Sequence    

Annotation

kegg
ID pop:POPTR_0006s22770g
description POPTRDRAFT_717040; hypothetical protein
nr
ID XP_011004216.1
description PREDICTED: probable small nuclear ribonucleoprotein G [Populus euphratica]
swissprot
ID O82221
description Probable small nuclear ribonucleoprotein G OS=Arabidopsis thaliana GN=At2g23930 PE=2 SV=1
trembl
ID A9PB05
description Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1
Gene Ontology
ID GO:0005730
description probable small nuclear ribonucleoprotein g

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43895: 100608-103210
cDNA
(Sanger)
(ID:Location)		 012_A20.ab1: 100715-103216 , 030_P19.ab1: 100713-103190 , 036_P10.ab1: 100713-103190 , 043_C01.ab1: 100710-103190

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004635_130 0.0 - - PREDICTED: probable small nuclear ribonucleoprotein G [Populus euphratica]
2 Hb_000755_080 0.1363061745 - - hypothetical protein RCOM_1016710 [Ricinus communis]
3 Hb_001051_090 0.156764528 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 11 [Jatropha curcas]
4 Hb_003327_030 0.1568618 - - Hsc70-interacting protein, putative [Ricinus communis]
5 Hb_000787_090 0.1574380843 - - PREDICTED: DDRGK domain-containing protein 1 [Vitis vinifera]
6 Hb_002896_060 0.1586560917 - - PREDICTED: synaptotagmin-2 [Jatropha curcas]
7 Hb_002814_120 0.1636347098 - - PREDICTED: uncharacterized protein LOC105633463 [Jatropha curcas]
8 Hb_097433_010 0.1658561672 - - PREDICTED: TPR repeat-containing thioredoxin TDX [Jatropha curcas]
9 Hb_000190_190 0.1668686371 - - PREDICTED: BI1-like protein [Gossypium raimondii]
10 Hb_013394_060 0.1675711447 - - PREDICTED: IST1-like protein isoform X1 [Jatropha curcas]
11 Hb_000453_140 0.1677906916 - - hypothetical protein POPTR_0009s02600g [Populus trichocarpa]
12 Hb_002965_030 0.1679172368 - - PREDICTED: uncharacterized protein LOC105643493 [Jatropha curcas]
13 Hb_000365_140 0.1684317805 - - PREDICTED: ethanolamine-phosphate cytidylyltransferase [Jatropha curcas]
14 Hb_001301_090 0.1686527219 - - conserved hypothetical protein [Ricinus communis]
15 Hb_067193_010 0.1693058887 - - -
16 Hb_003097_080 0.1698711095 - - hypothetical protein JCGZ_24481 [Jatropha curcas]
17 Hb_019516_030 0.1704737654 - - Calcyclin-binding protein, putative [Ricinus communis]
18 Hb_000030_060 0.1707885222 - - PREDICTED: T-complex protein 1 subunit theta [Jatropha curcas]
19 Hb_030928_040 0.1719105815 - - RNA-binding protein, putative [Ricinus communis]
20 Hb_000286_170 0.1720991925 - - PREDICTED: uncharacterized protein LOC105633355 [Jatropha curcas]

Gene co-expression network

sample Hb_004635_130 Hb_004635_130 Hb_000755_080 Hb_000755_080 Hb_004635_130--Hb_000755_080 Hb_001051_090 Hb_001051_090 Hb_004635_130--Hb_001051_090 Hb_003327_030 Hb_003327_030 Hb_004635_130--Hb_003327_030 Hb_000787_090 Hb_000787_090 Hb_004635_130--Hb_000787_090 Hb_002896_060 Hb_002896_060 Hb_004635_130--Hb_002896_060 Hb_002814_120 Hb_002814_120 Hb_004635_130--Hb_002814_120 Hb_000261_520 Hb_000261_520 Hb_000755_080--Hb_000261_520 Hb_000365_140 Hb_000365_140 Hb_000755_080--Hb_000365_140 Hb_005895_040 Hb_005895_040 Hb_000755_080--Hb_005895_040 Hb_004656_060 Hb_004656_060 Hb_000755_080--Hb_004656_060 Hb_000375_030 Hb_000375_030 Hb_000755_080--Hb_000375_030 Hb_000640_220 Hb_000640_220 Hb_000755_080--Hb_000640_220 Hb_001051_090--Hb_002896_060 Hb_027380_030 Hb_027380_030 Hb_001051_090--Hb_027380_030 Hb_000599_170 Hb_000599_170 Hb_001051_090--Hb_000599_170 Hb_002805_060 Hb_002805_060 Hb_001051_090--Hb_002805_060 Hb_004223_110 Hb_004223_110 Hb_001051_090--Hb_004223_110 Hb_000453_140 Hb_000453_140 Hb_001051_090--Hb_000453_140 Hb_097433_010 Hb_097433_010 Hb_003327_030--Hb_097433_010 Hb_035947_010 Hb_035947_010 Hb_003327_030--Hb_035947_010 Hb_003327_030--Hb_002814_120 Hb_000406_040 Hb_000406_040 Hb_003327_030--Hb_000406_040 Hb_002918_310 Hb_002918_310 Hb_003327_030--Hb_002918_310 Hb_002431_020 Hb_002431_020 Hb_000787_090--Hb_002431_020 Hb_132697_010 Hb_132697_010 Hb_000787_090--Hb_132697_010 Hb_001347_040 Hb_001347_040 Hb_000787_090--Hb_001347_040 Hb_004724_320 Hb_004724_320 Hb_000787_090--Hb_004724_320 Hb_001502_060 Hb_001502_060 Hb_000787_090--Hb_001502_060 Hb_000832_090 Hb_000832_090 Hb_000787_090--Hb_000832_090 Hb_002896_060--Hb_027380_030 Hb_002092_100 Hb_002092_100 Hb_002896_060--Hb_002092_100 Hb_002896_060--Hb_000453_140 Hb_001952_120 Hb_001952_120 Hb_002896_060--Hb_001952_120 Hb_002896_060--Hb_002805_060 Hb_001009_290 Hb_001009_290 Hb_002814_120--Hb_001009_290 Hb_002814_120--Hb_000755_080 Hb_011512_060 Hb_011512_060 Hb_002814_120--Hb_011512_060 Hb_012132_030 Hb_012132_030 Hb_002814_120--Hb_012132_030 Hb_006452_090 Hb_006452_090 Hb_002814_120--Hb_006452_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
42.0646 46.6166 52.4714 49.6978 234.178 59.3761
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
21.8206 39.2958 27.9643 48.7667 41.5705

CAGE analysis