Hb_002431_020

Information

Type -
Description -
Location Contig2431: 74437-78684
Sequence    

Annotation

kegg
ID rcu:RCOM_0559620
description F-box/LRR-repeat protein, putative
nr
ID XP_012066111.1
description PREDICTED: F-box protein SKP2A [Jatropha curcas]
swissprot
ID Q9LPL4
description F-box protein SKP2A OS=Arabidopsis thaliana GN=SKP2A PE=1 SV=1
trembl
ID A0A067L758
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25269 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25417: 74386-78486
cDNA
(Sanger)
(ID:Location)		 041_G19.ab1: 74386-77091

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002431_020 0.0 - - PREDICTED: F-box protein SKP2A [Jatropha curcas]
2 Hb_000787_090 0.0836301611 - - PREDICTED: DDRGK domain-containing protein 1 [Vitis vinifera]
3 Hb_001502_060 0.0936150092 - - DNA mismatch repair protein MSH2, putative [Ricinus communis]
4 Hb_132697_010 0.0951411532 - - conserved hypothetical protein [Ricinus communis]
5 Hb_001152_030 0.1122954366 - - hypothetical protein POPTR_0002s22050g [Populus trichocarpa]
6 Hb_000179_140 0.1123802496 - - phospholipid:diacylglycerol acyltransferase 1-like [Jatropha curcas]
7 Hb_002477_130 0.121436697 - - conserved hypothetical protein [Ricinus communis]
8 Hb_012753_020 0.1222167087 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000861_070 0.1230951066 - - conserved hypothetical protein [Ricinus communis]
10 Hb_002499_070 0.1239567802 - - PREDICTED: uncharacterized protein LOC105628378 isoform X2 [Jatropha curcas]
11 Hb_000510_310 0.124336835 transcription factor TF Family: bHLH PREDICTED: transcription factor UNE12-like [Jatropha curcas]
12 Hb_018790_030 0.1261337959 - - PREDICTED: cyclic phosphodiesterase-like [Jatropha curcas]
13 Hb_000072_350 0.1267302882 - - PREDICTED: WPP domain-interacting tail-anchored protein 1 [Jatropha curcas]
14 Hb_001140_250 0.1273793321 - - KDEL motif-containing protein 1 precursor, putative [Ricinus communis]
15 Hb_075481_030 0.1276067115 - - PREDICTED: DNA-binding protein RHL1 isoform X3 [Jatropha curcas]
16 Hb_002701_080 0.1286233371 - - PREDICTED: E3 ubiquitin-protein ligase At3g02290-like [Jatropha curcas]
17 Hb_004724_320 0.1300405676 - - Vesicle-associated membrane protein, putative [Ricinus communis]
18 Hb_003788_050 0.1311211509 - - PREDICTED: interferon-induced guanylate-binding protein 2-like [Jatropha curcas]
19 Hb_000521_260 0.1321662256 - - PREDICTED: zeaxanthin epoxidase, chloroplastic-like [Jatropha curcas]
20 Hb_007520_030 0.1329045621 - - PREDICTED: peroxisomal membrane protein PEX14 [Jatropha curcas]

Gene co-expression network

sample Hb_002431_020 Hb_002431_020 Hb_000787_090 Hb_000787_090 Hb_002431_020--Hb_000787_090 Hb_001502_060 Hb_001502_060 Hb_002431_020--Hb_001502_060 Hb_132697_010 Hb_132697_010 Hb_002431_020--Hb_132697_010 Hb_001152_030 Hb_001152_030 Hb_002431_020--Hb_001152_030 Hb_000179_140 Hb_000179_140 Hb_002431_020--Hb_000179_140 Hb_002477_130 Hb_002477_130 Hb_002431_020--Hb_002477_130 Hb_000787_090--Hb_132697_010 Hb_001347_040 Hb_001347_040 Hb_000787_090--Hb_001347_040 Hb_004724_320 Hb_004724_320 Hb_000787_090--Hb_004724_320 Hb_000787_090--Hb_001502_060 Hb_000832_090 Hb_000832_090 Hb_000787_090--Hb_000832_090 Hb_000072_350 Hb_000072_350 Hb_001502_060--Hb_000072_350 Hb_007520_030 Hb_007520_030 Hb_001502_060--Hb_007520_030 Hb_000529_260 Hb_000529_260 Hb_001502_060--Hb_000529_260 Hb_001502_060--Hb_002477_130 Hb_000424_010 Hb_000424_010 Hb_001502_060--Hb_000424_010 Hb_004128_050 Hb_004128_050 Hb_001502_060--Hb_004128_050 Hb_017987_020 Hb_017987_020 Hb_132697_010--Hb_017987_020 Hb_075481_030 Hb_075481_030 Hb_132697_010--Hb_075481_030 Hb_000933_020 Hb_000933_020 Hb_132697_010--Hb_000933_020 Hb_000861_070 Hb_000861_070 Hb_132697_010--Hb_000861_070 Hb_001152_030--Hb_000072_350 Hb_001152_030--Hb_001502_060 Hb_001152_030--Hb_000529_260 Hb_001080_270 Hb_001080_270 Hb_001152_030--Hb_001080_270 Hb_001140_250 Hb_001140_250 Hb_001152_030--Hb_001140_250 Hb_001221_150 Hb_001221_150 Hb_001152_030--Hb_001221_150 Hb_000179_140--Hb_017987_020 Hb_002636_180 Hb_002636_180 Hb_000179_140--Hb_002636_180 Hb_143243_010 Hb_143243_010 Hb_000179_140--Hb_143243_010 Hb_000179_140--Hb_132697_010 Hb_002400_310 Hb_002400_310 Hb_000179_140--Hb_002400_310 Hb_000365_140 Hb_000365_140 Hb_002477_130--Hb_000365_140 Hb_002477_130--Hb_000424_010 Hb_005895_040 Hb_005895_040 Hb_002477_130--Hb_005895_040 Hb_000640_220 Hb_000640_220 Hb_002477_130--Hb_000640_220 Hb_000358_250 Hb_000358_250 Hb_002477_130--Hb_000358_250 Hb_001771_120 Hb_001771_120 Hb_002477_130--Hb_001771_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
34.4945 37.4171 11.8419 30.3304 85.6627 37.2515
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
28.9029 22.7059 21.7801 28.6909 9.04576

CAGE analysis