Hb_000122_250

Information

Type transcription factor
Description TF Family: ERF
Location Contig122: 202824-203999
Sequence    

Annotation

kegg
ID rcu:RCOM_0687530
description Dehydration-responsive element-binding protein 2C, putative
nr
ID XP_002520794.1
description Dehydration-responsive element-binding protein 2C, putative [Ricinus communis]
swissprot
ID Q8LFR2
description Dehydration-responsive element-binding protein 2C OS=Arabidopsis thaliana GN=DREB2C PE=2 SV=2
trembl
ID B9S475
description Dehydration-responsive element-binding protein 2C, putative OS=Ricinus communis GN=RCOM_0687530 PE=4 SV=1
Gene Ontology
ID GO:0003677
description dehydration-responsive element-binding protein 2c

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06674: 203417-203674
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000122_250 0.0 transcription factor TF Family: ERF Dehydration-responsive element-binding protein 2C, putative [Ricinus communis]
2 Hb_013394_060 0.159674456 - - PREDICTED: IST1-like protein isoform X1 [Jatropha curcas]
3 Hb_002344_090 0.1711581205 - - PREDICTED: uncharacterized protein LOC105637976 [Jatropha curcas]
4 Hb_002999_060 0.179556936 - - PREDICTED: E3 ubiquitin-protein ligase RNF181 [Jatropha curcas]
5 Hb_000720_070 0.1882454296 transcription factor TF Family: HSF hypothetical protein JCGZ_20639 [Jatropha curcas]
6 Hb_003517_060 0.1894491412 - - hypothetical protein CISIN_1g044999mg, partial [Citrus sinensis]
7 Hb_000538_010 0.2033717334 transcription factor TF Family: MYB-related PREDICTED: protein REVEILLE 1 isoform X2 [Jatropha curcas]
8 Hb_030827_060 0.2043993706 transcription factor TF Family: HSF PREDICTED: heat stress transcription factor B-2b [Jatropha curcas]
9 Hb_002918_310 0.2046636071 - - PREDICTED: dnaJ protein homolog 1-like [Jatropha curcas]
10 Hb_004449_050 0.2051099009 - - PREDICTED: tyrosine-sulfated glycopeptide receptor 1-like [Jatropha curcas]
11 Hb_035947_010 0.2085605242 - - PREDICTED: serine/threonine-protein phosphatase 7 long form homolog [Elaeis guineensis]
12 Hb_106321_030 0.2092428308 - - PREDICTED: mitogen-activated protein kinase kinase kinase 1 [Jatropha curcas]
13 Hb_032202_170 0.2092774932 - - PREDICTED: uncharacterized protein LOC105643056 [Jatropha curcas]
14 Hb_010068_030 0.209538782 - - aconitase, putative [Ricinus communis]
15 Hb_000008_230 0.2161878958 - - hypothetical protein POPTR_0004s22120g [Populus trichocarpa]
16 Hb_008749_050 0.2163381063 - - PREDICTED: uncharacterized J domain-containing protein C4H3.01 [Jatropha curcas]
17 Hb_002239_040 0.216809244 - - Cellular apoptosis susceptibility protein / importin-alpha re-exporter, putative isoform 1 [Theobroma cacao]
18 Hb_003656_110 0.217385584 - - phospholipid:diacylglycerol acyltransferase 1-like [Jatropha curcas]
19 Hb_132697_010 0.219132788 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000152_560 0.2219049948 - - hypothetical protein JCGZ_26236 [Jatropha curcas]

Gene co-expression network

sample Hb_000122_250 Hb_000122_250 Hb_013394_060 Hb_013394_060 Hb_000122_250--Hb_013394_060 Hb_002344_090 Hb_002344_090 Hb_000122_250--Hb_002344_090 Hb_002999_060 Hb_002999_060 Hb_000122_250--Hb_002999_060 Hb_000720_070 Hb_000720_070 Hb_000122_250--Hb_000720_070 Hb_003517_060 Hb_003517_060 Hb_000122_250--Hb_003517_060 Hb_000538_010 Hb_000538_010 Hb_000122_250--Hb_000538_010 Hb_013394_060--Hb_002999_060 Hb_000483_380 Hb_000483_380 Hb_013394_060--Hb_000483_380 Hb_002965_030 Hb_002965_030 Hb_013394_060--Hb_002965_030 Hb_013394_060--Hb_000720_070 Hb_030827_060 Hb_030827_060 Hb_013394_060--Hb_030827_060 Hb_013394_060--Hb_000538_010 Hb_000008_230 Hb_000008_230 Hb_002344_090--Hb_000008_230 Hb_012340_020 Hb_012340_020 Hb_002344_090--Hb_012340_020 Hb_106321_030 Hb_106321_030 Hb_002344_090--Hb_106321_030 Hb_010068_030 Hb_010068_030 Hb_002344_090--Hb_010068_030 Hb_002344_090--Hb_013394_060 Hb_002999_060--Hb_002965_030 Hb_002999_060--Hb_030827_060 Hb_002999_060--Hb_000720_070 Hb_002999_060--Hb_000483_380 Hb_000422_110 Hb_000422_110 Hb_002999_060--Hb_000422_110 Hb_000720_070--Hb_002965_030 Hb_001534_070 Hb_001534_070 Hb_000720_070--Hb_001534_070 Hb_005725_020 Hb_005725_020 Hb_000720_070--Hb_005725_020 Hb_027420_050 Hb_027420_050 Hb_000720_070--Hb_027420_050 Hb_004449_050 Hb_004449_050 Hb_003517_060--Hb_004449_050 Hb_000465_480 Hb_000465_480 Hb_003517_060--Hb_000465_480 Hb_000336_140 Hb_000336_140 Hb_003517_060--Hb_000336_140 Hb_018133_030 Hb_018133_030 Hb_003517_060--Hb_018133_030 Hb_001053_030 Hb_001053_030 Hb_003517_060--Hb_001053_030 Hb_000140_070 Hb_000140_070 Hb_003517_060--Hb_000140_070 Hb_001307_010 Hb_001307_010 Hb_000538_010--Hb_001307_010 Hb_031711_010 Hb_031711_010 Hb_000538_010--Hb_031711_010 Hb_000390_220 Hb_000390_220 Hb_000538_010--Hb_000390_220 Hb_000920_250 Hb_000920_250 Hb_000538_010--Hb_000920_250 Hb_001189_130 Hb_001189_130 Hb_000538_010--Hb_001189_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.808 24.6561 3.98263 8.68434 40.3182 6.45305
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.2812 8.59886 11.2403 1.95225 1.01381

CAGE analysis