Hb_011344_010

Information

Type -
Description -
Location Contig11344: 4082-7581
Sequence    

Annotation

kegg
ID rcu:RCOM_1679680
description protein with unknown function
nr
ID XP_012087113.1
description PREDICTED: NADH dehydrogenase (ubiquinone) complex I, assembly factor 6 [Jatropha curcas]
swissprot
ID A7YVD7
description NADH dehydrogenase (ubiquinone) complex I, assembly factor 6 OS=Bos taurus GN=NDUFAF6 PE=2 SV=1
trembl
ID A0A067K038
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20766 PE=4 SV=1
Gene Ontology
ID GO:0005622
description nadh dehydrogenase complex assembly factor 6

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03990: 5572-7497
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011344_010 0.0 - - PREDICTED: NADH dehydrogenase (ubiquinone) complex I, assembly factor 6 [Jatropha curcas]
2 Hb_001427_170 0.0768060344 - - PREDICTED: 40S ribosomal protein S15a-5-like [Populus euphratica]
3 Hb_001341_040 0.0857094334 - - hypothetical protein JCGZ_05578 [Jatropha curcas]
4 Hb_001040_170 0.0995297493 - - PREDICTED: pentatricopeptide repeat-containing protein At4g21705, mitochondrial isoform X1 [Jatropha curcas]
5 Hb_002997_100 0.1051563143 - - hypothetical protein JCGZ_19555 [Jatropha curcas]
6 Hb_001057_010 0.1126089956 - - cation-transporting atpase plant, putative [Ricinus communis]
7 Hb_000733_060 0.116809769 - - PREDICTED: protein GUCD1 isoform X1 [Jatropha curcas]
8 Hb_182026_010 0.1175626875 - - hypothetical protein CICLE_v10003487mg, partial [Citrus clementina]
9 Hb_004512_020 0.1175627386 - - PREDICTED: tetratricopeptide repeat protein 1 [Jatropha curcas]
10 Hb_003097_190 0.1180556215 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 3 [Jatropha curcas]
11 Hb_017168_010 0.1210172132 - - conserved hypothetical protein [Ricinus communis]
12 Hb_005288_160 0.1224369408 - - PREDICTED: uncharacterized protein LOC105647746 isoform X1 [Jatropha curcas]
13 Hb_012132_030 0.1228572024 - - PREDICTED: RNA polymerase-associated protein CTR9 homolog [Jatropha curcas]
14 Hb_012654_010 0.1228902179 transcription factor TF Family: MYB-related PREDICTED: uncharacterized protein LOC105629849 [Jatropha curcas]
15 Hb_005237_010 0.1248367552 - - PREDICTED: uncharacterized protein LOC105630921 [Jatropha curcas]
16 Hb_128548_020 0.125300991 - - PREDICTED: transmembrane protein 56-like [Jatropha curcas]
17 Hb_006029_010 0.1287488181 - - PREDICTED: putative disease resistance RPP13-like protein 1 [Populus euphratica]
18 Hb_022256_040 0.1288409535 - - PREDICTED: probable E3 ubiquitin-protein ligase rbrA isoform X2 [Jatropha curcas]
19 Hb_000406_040 0.1300375916 - - PREDICTED: LOW QUALITY PROTEIN: FRIGIDA-like protein 5 [Jatropha curcas]
20 Hb_000107_100 0.1301312058 - - hypothetical protein JCGZ_16208 [Jatropha curcas]

Gene co-expression network

sample Hb_011344_010 Hb_011344_010 Hb_001427_170 Hb_001427_170 Hb_011344_010--Hb_001427_170 Hb_001341_040 Hb_001341_040 Hb_011344_010--Hb_001341_040 Hb_001040_170 Hb_001040_170 Hb_011344_010--Hb_001040_170 Hb_002997_100 Hb_002997_100 Hb_011344_010--Hb_002997_100 Hb_001057_010 Hb_001057_010 Hb_011344_010--Hb_001057_010 Hb_000733_060 Hb_000733_060 Hb_011344_010--Hb_000733_060 Hb_004512_020 Hb_004512_020 Hb_001427_170--Hb_004512_020 Hb_182026_010 Hb_182026_010 Hb_001427_170--Hb_182026_010 Hb_005928_060 Hb_005928_060 Hb_001427_170--Hb_005928_060 Hb_012132_030 Hb_012132_030 Hb_001427_170--Hb_012132_030 Hb_017168_010 Hb_017168_010 Hb_001427_170--Hb_017168_010 Hb_001341_040--Hb_000733_060 Hb_000768_030 Hb_000768_030 Hb_001341_040--Hb_000768_030 Hb_000161_030 Hb_000161_030 Hb_001341_040--Hb_000161_030 Hb_006029_010 Hb_006029_010 Hb_001341_040--Hb_006029_010 Hb_001341_040--Hb_002997_100 Hb_000107_100 Hb_000107_100 Hb_001040_170--Hb_000107_100 Hb_006091_030 Hb_006091_030 Hb_001040_170--Hb_006091_030 Hb_001040_170--Hb_017168_010 Hb_000327_240 Hb_000327_240 Hb_001040_170--Hb_000327_240 Hb_005237_010 Hb_005237_010 Hb_001040_170--Hb_005237_010 Hb_000340_510 Hb_000340_510 Hb_001040_170--Hb_000340_510 Hb_022256_040 Hb_022256_040 Hb_002997_100--Hb_022256_040 Hb_002997_100--Hb_182026_010 Hb_000078_130 Hb_000078_130 Hb_002997_100--Hb_000078_130 Hb_000230_330 Hb_000230_330 Hb_002997_100--Hb_000230_330 Hb_002997_100--Hb_000733_060 Hb_012654_010 Hb_012654_010 Hb_002997_100--Hb_012654_010 Hb_001057_010--Hb_012654_010 Hb_001057_010--Hb_000340_510 Hb_001057_010--Hb_005237_010 Hb_001057_010--Hb_017168_010 Hb_003097_190 Hb_003097_190 Hb_001057_010--Hb_003097_190 Hb_002942_220 Hb_002942_220 Hb_001057_010--Hb_002942_220 Hb_005288_160 Hb_005288_160 Hb_000733_060--Hb_005288_160 Hb_023226_060 Hb_023226_060 Hb_000733_060--Hb_023226_060 Hb_002631_050 Hb_002631_050 Hb_000733_060--Hb_002631_050 Hb_000733_060--Hb_022256_040 Hb_000733_060--Hb_000768_030 Hb_001001_160 Hb_001001_160 Hb_000733_060--Hb_001001_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.7717 4.17185 1.89123 3.422 27.8101 11.41
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.22067 8.26172 12.0558 3.92996 2.73267

CAGE analysis