Hb_001427_170

Information

Type -
Description -
Location Contig1427: 154354-156723
Sequence    

Annotation

kegg
ID pop:POPTR_0009s07570g
description hypothetical protein
nr
ID XP_011004096.1
description PREDICTED: 40S ribosomal protein S15a-5-like [Populus euphratica]
swissprot
ID Q9M0E0
description 40S ribosomal protein S15a-5 OS=Arabidopsis thaliana GN=RPS15AE PE=2 SV=1
trembl
ID A9PCW7
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0009s07560g PE=2 SV=1
Gene Ontology
ID GO:0005739
description 40s ribosomal protein s15a-5

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11324: 155820-156221 , PASA_asmbl_11325: 154260-156680
cDNA
(Sanger)
(ID:Location)		 028_F08.ab1: 154262-156680

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001427_170 0.0 - - PREDICTED: 40S ribosomal protein S15a-5-like [Populus euphratica]
2 Hb_011344_010 0.0768060344 - - PREDICTED: NADH dehydrogenase (ubiquinone) complex I, assembly factor 6 [Jatropha curcas]
3 Hb_004512_020 0.0815041928 - - PREDICTED: tetratricopeptide repeat protein 1 [Jatropha curcas]
4 Hb_182026_010 0.1003947052 - - hypothetical protein CICLE_v10003487mg, partial [Citrus clementina]
5 Hb_005928_060 0.1010533559 - - DNA-directed RNA polymerase III 25 kD polypeptide, putative [Ricinus communis]
6 Hb_012132_030 0.1033539499 - - PREDICTED: RNA polymerase-associated protein CTR9 homolog [Jatropha curcas]
7 Hb_017168_010 0.1048489295 - - conserved hypothetical protein [Ricinus communis]
8 Hb_005237_010 0.1066490259 - - PREDICTED: uncharacterized protein LOC105630921 [Jatropha curcas]
9 Hb_007547_010 0.112744773 - - PREDICTED: diphthamide biosynthesis protein 1 [Jatropha curcas]
10 Hb_001341_040 0.1139081761 - - hypothetical protein JCGZ_05578 [Jatropha curcas]
11 Hb_000175_490 0.1142550676 - - PREDICTED: probable polygalacturonase At1g80170 isoform X1 [Jatropha curcas]
12 Hb_001040_170 0.1145236342 - - PREDICTED: pentatricopeptide repeat-containing protein At4g21705, mitochondrial isoform X1 [Jatropha curcas]
13 Hb_003097_190 0.1171072978 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 3 [Jatropha curcas]
14 Hb_005288_160 0.1179619669 - - PREDICTED: uncharacterized protein LOC105647746 isoform X1 [Jatropha curcas]
15 Hb_001057_010 0.1192296534 - - cation-transporting atpase plant, putative [Ricinus communis]
16 Hb_000768_030 0.1199230496 - - PREDICTED: ELMO domain-containing protein A isoform X1 [Jatropha curcas]
17 Hb_000733_060 0.120100547 - - PREDICTED: protein GUCD1 isoform X1 [Jatropha curcas]
18 Hb_012654_010 0.1203155731 transcription factor TF Family: MYB-related PREDICTED: uncharacterized protein LOC105629849 [Jatropha curcas]
19 Hb_010222_080 0.121830713 - - PREDICTED: pentatricopeptide repeat-containing protein At2g06000 [Jatropha curcas]
20 Hb_002997_100 0.1228817306 - - hypothetical protein JCGZ_19555 [Jatropha curcas]

Gene co-expression network

sample Hb_001427_170 Hb_001427_170 Hb_011344_010 Hb_011344_010 Hb_001427_170--Hb_011344_010 Hb_004512_020 Hb_004512_020 Hb_001427_170--Hb_004512_020 Hb_182026_010 Hb_182026_010 Hb_001427_170--Hb_182026_010 Hb_005928_060 Hb_005928_060 Hb_001427_170--Hb_005928_060 Hb_012132_030 Hb_012132_030 Hb_001427_170--Hb_012132_030 Hb_017168_010 Hb_017168_010 Hb_001427_170--Hb_017168_010 Hb_001341_040 Hb_001341_040 Hb_011344_010--Hb_001341_040 Hb_001040_170 Hb_001040_170 Hb_011344_010--Hb_001040_170 Hb_002997_100 Hb_002997_100 Hb_011344_010--Hb_002997_100 Hb_001057_010 Hb_001057_010 Hb_011344_010--Hb_001057_010 Hb_000733_060 Hb_000733_060 Hb_011344_010--Hb_000733_060 Hb_004512_020--Hb_012132_030 Hb_000946_120 Hb_000946_120 Hb_004512_020--Hb_000946_120 Hb_031527_100 Hb_031527_100 Hb_004512_020--Hb_031527_100 Hb_000365_140 Hb_000365_140 Hb_004512_020--Hb_000365_140 Hb_000422_140 Hb_000422_140 Hb_004512_020--Hb_000422_140 Hb_182026_010--Hb_002997_100 Hb_000340_510 Hb_000340_510 Hb_182026_010--Hb_000340_510 Hb_022256_040 Hb_022256_040 Hb_182026_010--Hb_022256_040 Hb_002631_050 Hb_002631_050 Hb_182026_010--Hb_002631_050 Hb_002818_040 Hb_002818_040 Hb_182026_010--Hb_002818_040 Hb_006029_010 Hb_006029_010 Hb_182026_010--Hb_006029_010 Hb_000905_190 Hb_000905_190 Hb_005928_060--Hb_000905_190 Hb_005527_050 Hb_005527_050 Hb_005928_060--Hb_005527_050 Hb_001214_130 Hb_001214_130 Hb_005928_060--Hb_001214_130 Hb_000019_230 Hb_000019_230 Hb_005928_060--Hb_000019_230 Hb_005237_010 Hb_005237_010 Hb_005928_060--Hb_005237_010 Hb_000997_020 Hb_000997_020 Hb_005928_060--Hb_000997_020 Hb_012132_030--Hb_000946_120 Hb_012132_030--Hb_017168_010 Hb_010222_080 Hb_010222_080 Hb_012132_030--Hb_010222_080 Hb_001541_260 Hb_001541_260 Hb_012132_030--Hb_001541_260 Hb_144787_030 Hb_144787_030 Hb_012132_030--Hb_144787_030 Hb_001136_100 Hb_001136_100 Hb_012132_030--Hb_001136_100 Hb_000107_100 Hb_000107_100 Hb_017168_010--Hb_000107_100 Hb_017168_010--Hb_010222_080 Hb_017168_010--Hb_000340_510 Hb_002026_110 Hb_002026_110 Hb_017168_010--Hb_002026_110 Hb_002942_220 Hb_002942_220 Hb_017168_010--Hb_002942_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
51.9578 19.6866 15.7647 13.6395 109.482 50.1488
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
25.7258 46.6021 42.9849 12.4608 13.7709

CAGE analysis