Hb_000768_030

Information

Type -
Description -
Location Contig768: 20385-31515
Sequence    

Annotation

kegg
ID rcu:RCOM_0845420
description hypothetical protein
nr
ID XP_012070340.1
description PREDICTED: ELMO domain-containing protein A isoform X1 [Jatropha curcas]
swissprot
ID Q54YW1
description ELMO domain-containing protein A OS=Dictyostelium discoideum GN=elmoA PE=1 SV=1
trembl
ID A0A067L543
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02640 PE=4 SV=1
Gene Ontology
ID GO:0009414
description elmo domain-containing protein a

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57484: 20747-30461 , PASA_asmbl_57485: 20533-31471
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000768_030 0.0 - - PREDICTED: ELMO domain-containing protein A isoform X1 [Jatropha curcas]
2 Hb_000175_490 0.0549595549 - - PREDICTED: probable polygalacturonase At1g80170 isoform X1 [Jatropha curcas]
3 Hb_000733_060 0.0806354544 - - PREDICTED: protein GUCD1 isoform X1 [Jatropha curcas]
4 Hb_023226_060 0.0819054696 - - unnamed protein product [Vitis vinifera]
5 Hb_003453_020 0.0864647927 - - PREDICTED: histidine biosynthesis bifunctional protein hisIE, chloroplastic [Jatropha curcas]
6 Hb_004032_050 0.0910907524 - - hypothetical protein CISIN_1g014592mg [Citrus sinensis]
7 Hb_003384_030 0.092693368 - - PREDICTED: eukaryotic translation initiation factor 2 subunit beta-like [Jatropha curcas]
8 Hb_004678_020 0.0928333491 - - PREDICTED: protein YIF1B [Jatropha curcas]
9 Hb_182026_010 0.0940050504 - - hypothetical protein CICLE_v10003487mg, partial [Citrus clementina]
10 Hb_003605_070 0.0947310284 - - PREDICTED: angio-associated migratory cell protein [Jatropha curcas]
11 Hb_002276_190 0.0977323637 - - PREDICTED: uncharacterized protein LOC105640686 [Jatropha curcas]
12 Hb_002044_090 0.0977878843 - - PREDICTED: uncharacterized protein LOC105643541 isoform X1 [Jatropha curcas]
13 Hb_000172_120 0.0983315195 - - PREDICTED: uncharacterized protein LOC105650770 isoform X1 [Jatropha curcas]
14 Hb_005288_160 0.0988130717 - - PREDICTED: uncharacterized protein LOC105647746 isoform X1 [Jatropha curcas]
15 Hb_000997_020 0.0993275771 - - PREDICTED: uncharacterized protein LOC105629694 [Jatropha curcas]
16 Hb_002818_040 0.0996447751 - - tRNA synthetase-related family protein [Populus trichocarpa]
17 Hb_000062_230 0.0996575757 - - PREDICTED: probable thimet oligopeptidase isoform X1 [Jatropha curcas]
18 Hb_001341_040 0.1002200073 - - hypothetical protein JCGZ_05578 [Jatropha curcas]
19 Hb_004096_170 0.1004237363 - - PREDICTED: uncharacterized protein DDB_G0275933 [Jatropha curcas]
20 Hb_002377_040 0.1028376314 - - serine/threonine protein kinase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000768_030 Hb_000768_030 Hb_000175_490 Hb_000175_490 Hb_000768_030--Hb_000175_490 Hb_000733_060 Hb_000733_060 Hb_000768_030--Hb_000733_060 Hb_023226_060 Hb_023226_060 Hb_000768_030--Hb_023226_060 Hb_003453_020 Hb_003453_020 Hb_000768_030--Hb_003453_020 Hb_004032_050 Hb_004032_050 Hb_000768_030--Hb_004032_050 Hb_003384_030 Hb_003384_030 Hb_000768_030--Hb_003384_030 Hb_000175_490--Hb_023226_060 Hb_000997_020 Hb_000997_020 Hb_000175_490--Hb_000997_020 Hb_000175_490--Hb_004032_050 Hb_182026_010 Hb_182026_010 Hb_000175_490--Hb_182026_010 Hb_002276_190 Hb_002276_190 Hb_000175_490--Hb_002276_190 Hb_005288_160 Hb_005288_160 Hb_000733_060--Hb_005288_160 Hb_000733_060--Hb_023226_060 Hb_002631_050 Hb_002631_050 Hb_000733_060--Hb_002631_050 Hb_022256_040 Hb_022256_040 Hb_000733_060--Hb_022256_040 Hb_001001_160 Hb_001001_160 Hb_000733_060--Hb_001001_160 Hb_023226_060--Hb_005288_160 Hb_023226_060--Hb_022256_040 Hb_011644_020 Hb_011644_020 Hb_023226_060--Hb_011644_020 Hb_000322_050 Hb_000322_050 Hb_003453_020--Hb_000322_050 Hb_004096_170 Hb_004096_170 Hb_003453_020--Hb_004096_170 Hb_000176_110 Hb_000176_110 Hb_003453_020--Hb_000176_110 Hb_005527_050 Hb_005527_050 Hb_003453_020--Hb_005527_050 Hb_000012_090 Hb_000012_090 Hb_003453_020--Hb_000012_090 Hb_012305_070 Hb_012305_070 Hb_003453_020--Hb_012305_070 Hb_004032_050--Hb_002276_190 Hb_000307_170 Hb_000307_170 Hb_004032_050--Hb_000307_170 Hb_001623_580 Hb_001623_580 Hb_004032_050--Hb_001623_580 Hb_003605_070 Hb_003605_070 Hb_004032_050--Hb_003605_070 Hb_000001_180 Hb_000001_180 Hb_003384_030--Hb_000001_180 Hb_000462_150 Hb_000462_150 Hb_003384_030--Hb_000462_150 Hb_005914_230 Hb_005914_230 Hb_003384_030--Hb_005914_230 Hb_002818_040 Hb_002818_040 Hb_003384_030--Hb_002818_040 Hb_018663_020 Hb_018663_020 Hb_003384_030--Hb_018663_020 Hb_001969_040 Hb_001969_040 Hb_003384_030--Hb_001969_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
66.0351 15.1887 19.0665 11.5458 101.499 63.3868
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
44.5737 30.2416 33.2185 11.0687 8.06358

CAGE analysis