Hb_002276_190

Information

Type -
Description -
Location Contig2276: 199616-208145
Sequence    

Annotation

kegg
ID pop:POPTR_0010s14770g
description POPTRDRAFT_822181; BSD domain-containing family protein
nr
ID XP_012080470.1
description PREDICTED: uncharacterized protein LOC105640686 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067K5A0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11782 PE=4 SV=1
Gene Ontology
ID GO:0004252
description bsd domain-containing family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23744: 203655-206306 , PASA_asmbl_23745: 202944-206306
cDNA
(Sanger)
(ID:Location)		 001_E15.ab1: 204257-206306 , 013_G14.ab1: 204344-206306 , 015_O23.ab1: 206006-206306 , 035_I23.ab1: 204283-206306 , 042_B23.ab1: 205767-206306 , 044_N11.ab1: 204411-206306 , 048_M01.ab1: 204334-206306

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002276_190 0.0 - - PREDICTED: uncharacterized protein LOC105640686 [Jatropha curcas]
2 Hb_004032_050 0.0768054854 - - hypothetical protein CISIN_1g014592mg [Citrus sinensis]
3 Hb_003605_070 0.0890363802 - - PREDICTED: angio-associated migratory cell protein [Jatropha curcas]
4 Hb_001623_580 0.0909050466 - - PREDICTED: histone-lysine N-methyltransferase family member SUVH9-like [Jatropha curcas]
5 Hb_000175_490 0.0944181271 - - PREDICTED: probable polygalacturonase At1g80170 isoform X1 [Jatropha curcas]
6 Hb_005288_160 0.0972853959 - - PREDICTED: uncharacterized protein LOC105647746 isoform X1 [Jatropha curcas]
7 Hb_000768_030 0.0977323637 - - PREDICTED: ELMO domain-containing protein A isoform X1 [Jatropha curcas]
8 Hb_000307_170 0.1042365436 - - PREDICTED: uncharacterized protein LOC105638528 [Jatropha curcas]
9 Hb_128548_020 0.1060781952 - - PREDICTED: transmembrane protein 56-like [Jatropha curcas]
10 Hb_023226_060 0.1085240213 - - unnamed protein product [Vitis vinifera]
11 Hb_009801_010 0.1100212109 - - ATPase inhibitor, putative [Ricinus communis]
12 Hb_005015_010 0.1104298813 - - PREDICTED: programmed cell death protein 2-like [Jatropha curcas]
13 Hb_000997_020 0.1136363361 - - PREDICTED: uncharacterized protein LOC105629694 [Jatropha curcas]
14 Hb_000209_090 0.114124036 - - PREDICTED: 60S ribosomal protein L7-2-like [Jatropha curcas]
15 Hb_000392_280 0.1141426963 - - PREDICTED: pectinesterase 3 [Jatropha curcas]
16 Hb_003126_040 0.1153441758 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000976_270 0.1158860416 - - PREDICTED: uncharacterized protein LOC105646226 [Jatropha curcas]
18 Hb_004525_100 0.1171231099 - - hypothetical protein JCGZ_18418 [Jatropha curcas]
19 Hb_000733_060 0.1194190401 - - PREDICTED: protein GUCD1 isoform X1 [Jatropha curcas]
20 Hb_011644_020 0.119688357 - - PREDICTED: choline-phosphate cytidylyltransferase 2 [Vitis vinifera]

Gene co-expression network

sample Hb_002276_190 Hb_002276_190 Hb_004032_050 Hb_004032_050 Hb_002276_190--Hb_004032_050 Hb_003605_070 Hb_003605_070 Hb_002276_190--Hb_003605_070 Hb_001623_580 Hb_001623_580 Hb_002276_190--Hb_001623_580 Hb_000175_490 Hb_000175_490 Hb_002276_190--Hb_000175_490 Hb_005288_160 Hb_005288_160 Hb_002276_190--Hb_005288_160 Hb_000768_030 Hb_000768_030 Hb_002276_190--Hb_000768_030 Hb_000307_170 Hb_000307_170 Hb_004032_050--Hb_000307_170 Hb_004032_050--Hb_001623_580 Hb_004032_050--Hb_000175_490 Hb_004032_050--Hb_000768_030 Hb_004032_050--Hb_003605_070 Hb_003605_070--Hb_005288_160 Hb_000209_090 Hb_000209_090 Hb_003605_070--Hb_000209_090 Hb_003605_070--Hb_001623_580 Hb_001016_060 Hb_001016_060 Hb_003605_070--Hb_001016_060 Hb_000847_070 Hb_000847_070 Hb_003605_070--Hb_000847_070 Hb_001623_580--Hb_005288_160 Hb_001623_580--Hb_000209_090 Hb_000284_200 Hb_000284_200 Hb_001623_580--Hb_000284_200 Hb_000175_490--Hb_000768_030 Hb_023226_060 Hb_023226_060 Hb_000175_490--Hb_023226_060 Hb_000997_020 Hb_000997_020 Hb_000175_490--Hb_000997_020 Hb_182026_010 Hb_182026_010 Hb_000175_490--Hb_182026_010 Hb_000733_060 Hb_000733_060 Hb_005288_160--Hb_000733_060 Hb_005288_160--Hb_023226_060 Hb_128548_020 Hb_128548_020 Hb_005288_160--Hb_128548_020 Hb_002631_050 Hb_002631_050 Hb_005288_160--Hb_002631_050 Hb_003453_020 Hb_003453_020 Hb_005288_160--Hb_003453_020 Hb_000768_030--Hb_000733_060 Hb_000768_030--Hb_023226_060 Hb_000768_030--Hb_003453_020 Hb_003384_030 Hb_003384_030 Hb_000768_030--Hb_003384_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
110.281 13.1989 24.3036 20.1297 170.987 86.7759
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
49.5157 62.8069 32.4516 24.7487 10.6066

CAGE analysis