Hb_003656_110

Information

Type -
Description -
Location Contig3656: 108799-115493
Sequence    

Annotation

kegg
ID rcu:RCOM_1046030
description phosphatidylcholine-sterol O-acyltransferase, putative (EC:2.3.1.158)
nr
ID NP_001292930.1
description phospholipid:diacylglycerol acyltransferase 1-like [Jatropha curcas]
swissprot
ID Q9FNA9
description Phospholipid:diacylglycerol acyltransferase 1 OS=Arabidopsis thaliana GN=PDAT1 PE=2 SV=1
trembl
ID H6TBK7
description Phospholipid:diacylglycerol acyltransferase OS=Jatropha curcas GN=PDAT PE=2 SV=1
Gene Ontology
ID GO:0005773
description phospholipid:diacylglycerol acyltransferase 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37633: 108843-109716 , PASA_asmbl_37634: 111787-115419 , PASA_asmbl_37635: 111787-115419 , PASA_asmbl_37636: 114799-115210
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003656_110 0.0 - - phospholipid:diacylglycerol acyltransferase 1-like [Jatropha curcas]
2 Hb_032202_170 0.127658025 - - PREDICTED: uncharacterized protein LOC105643056 [Jatropha curcas]
3 Hb_000028_040 0.1284316181 - - PREDICTED: prostaglandin E synthase 2-like [Jatropha curcas]
4 Hb_003097_190 0.1350736346 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 3 [Jatropha curcas]
5 Hb_004512_020 0.1390850819 - - PREDICTED: tetratricopeptide repeat protein 1 [Jatropha curcas]
6 Hb_011457_160 0.1412394319 - - PREDICTED: BI1-like protein [Jatropha curcas]
7 Hb_002890_180 0.1421376082 - - PREDICTED: squamous cell carcinoma antigen recognized by T-cells 3 [Jatropha curcas]
8 Hb_000787_090 0.148811494 - - PREDICTED: DDRGK domain-containing protein 1 [Vitis vinifera]
9 Hb_132697_010 0.14940925 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000946_120 0.153663892 - - DNA binding protein, putative [Ricinus communis]
11 Hb_002431_020 0.1537574227 - - PREDICTED: F-box protein SKP2A [Jatropha curcas]
12 Hb_002239_040 0.1539676563 - - Cellular apoptosis susceptibility protein / importin-alpha re-exporter, putative isoform 1 [Theobroma cacao]
13 Hb_011004_020 0.1547271139 - - PREDICTED: pyridoxal 5'-phosphate synthase-like subunit PDX1.2 [Jatropha curcas]
14 Hb_004724_320 0.1567655734 - - Vesicle-associated membrane protein, putative [Ricinus communis]
15 Hb_011344_010 0.1575455734 - - PREDICTED: NADH dehydrogenase (ubiquinone) complex I, assembly factor 6 [Jatropha curcas]
16 Hb_012132_030 0.158925522 - - PREDICTED: RNA polymerase-associated protein CTR9 homolog [Jatropha curcas]
17 Hb_000030_040 0.1592860559 - - yth domain-containing protein, putative [Ricinus communis]
18 Hb_001502_060 0.1596198162 - - DNA mismatch repair protein MSH2, putative [Ricinus communis]
19 Hb_011485_040 0.1596816945 - - PREDICTED: probable mitochondrial adenine nucleotide transporter BTL3 [Jatropha curcas]
20 Hb_048476_170 0.1628279522 - - PREDICTED: cleavage and polyadenylation specificity factor subunit 3-II-like [Citrus sinensis]

Gene co-expression network

sample Hb_003656_110 Hb_003656_110 Hb_032202_170 Hb_032202_170 Hb_003656_110--Hb_032202_170 Hb_000028_040 Hb_000028_040 Hb_003656_110--Hb_000028_040 Hb_003097_190 Hb_003097_190 Hb_003656_110--Hb_003097_190 Hb_004512_020 Hb_004512_020 Hb_003656_110--Hb_004512_020 Hb_011457_160 Hb_011457_160 Hb_003656_110--Hb_011457_160 Hb_002890_180 Hb_002890_180 Hb_003656_110--Hb_002890_180 Hb_000787_090 Hb_000787_090 Hb_032202_170--Hb_000787_090 Hb_132697_010 Hb_132697_010 Hb_032202_170--Hb_132697_010 Hb_004724_320 Hb_004724_320 Hb_032202_170--Hb_004724_320 Hb_010368_020 Hb_010368_020 Hb_032202_170--Hb_010368_020 Hb_000861_070 Hb_000861_070 Hb_032202_170--Hb_000861_070 Hb_000028_040--Hb_004512_020 Hb_002872_020 Hb_002872_020 Hb_000028_040--Hb_002872_020 Hb_011344_010 Hb_011344_010 Hb_000028_040--Hb_011344_010 Hb_001427_170 Hb_001427_170 Hb_000028_040--Hb_001427_170 Hb_000352_110 Hb_000352_110 Hb_000028_040--Hb_000352_110 Hb_010068_030 Hb_010068_030 Hb_003097_190--Hb_010068_030 Hb_012654_010 Hb_012654_010 Hb_003097_190--Hb_012654_010 Hb_000152_560 Hb_000152_560 Hb_003097_190--Hb_000152_560 Hb_001057_010 Hb_001057_010 Hb_003097_190--Hb_001057_010 Hb_002890_030 Hb_002890_030 Hb_003097_190--Hb_002890_030 Hb_003097_190--Hb_000861_070 Hb_004512_020--Hb_001427_170 Hb_012132_030 Hb_012132_030 Hb_004512_020--Hb_012132_030 Hb_000946_120 Hb_000946_120 Hb_004512_020--Hb_000946_120 Hb_031527_100 Hb_031527_100 Hb_004512_020--Hb_031527_100 Hb_000365_140 Hb_000365_140 Hb_004512_020--Hb_000365_140 Hb_000422_140 Hb_000422_140 Hb_004512_020--Hb_000422_140 Hb_002311_250 Hb_002311_250 Hb_011457_160--Hb_002311_250 Hb_011457_160--Hb_000028_040 Hb_011457_160--Hb_011344_010 Hb_004645_040 Hb_004645_040 Hb_011457_160--Hb_004645_040 Hb_002239_040 Hb_002239_040 Hb_011457_160--Hb_002239_040 Hb_000796_030 Hb_000796_030 Hb_002890_180--Hb_000796_030 Hb_004718_010 Hb_004718_010 Hb_002890_180--Hb_004718_010 Hb_000072_350 Hb_000072_350 Hb_002890_180--Hb_000072_350 Hb_048476_170 Hb_048476_170 Hb_002890_180--Hb_048476_170 Hb_002188_110 Hb_002188_110 Hb_002890_180--Hb_002188_110 Hb_128743_010 Hb_128743_010 Hb_002890_180--Hb_128743_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
15.8115 29.2825 8.53221 15.3473 90.0258 24.9509
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
22.1933 33.6656 29.876 17.0496 14.0654

CAGE analysis