Hb_000352_110

Information

Type -
Description -
Location Contig352: 112424-115447
Sequence    

Annotation

kegg
ID rcu:RCOM_0966800
description DNA topoisomerase II, putative (EC:1.3.1.74)
nr
ID XP_002517801.1
description DNA topoisomerase II, putative [Ricinus communis]
swissprot
ID O24308
description DNA topoisomerase 2 OS=Pisum sativum GN=TOP2 PE=2 SV=1
trembl
ID B9RVN2
description DNA topoisomerase II, putative OS=Ricinus communis GN=RCOM_0966800 PE=4 SV=1
Gene Ontology
ID GO:0016853
description dna topoisomerase 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36556: 112187-113590 , PASA_asmbl_36557: 112192-113372 , PASA_asmbl_36558: 112460-113391
cDNA
(Sanger)
(ID:Location)		 003_G12.ab1: 112240-113560 , 018_G23.ab1: 112310-113590 , 039_F22.ab1: 112314-113590 , 046_P12.ab1: 112392-113519

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000352_110 0.0 - - DNA topoisomerase II, putative [Ricinus communis]
2 Hb_002973_080 0.090426183 - - PREDICTED: uncharacterized protein LOC105630313 [Jatropha curcas]
3 Hb_001629_110 0.0958862859 - - PREDICTED: uncharacterized protein LOC105632808 [Jatropha curcas]
4 Hb_000330_050 0.0988092018 - - Protein yrdA, putative [Ricinus communis]
5 Hb_007575_040 0.1000026471 transcription factor TF Family: bZIP PREDICTED: transcription factor VIP1-like [Jatropha curcas]
6 Hb_000172_370 0.1028699669 - - -
7 Hb_010638_020 0.10374245 - - PREDICTED: uncharacterized protein LOC105638189 isoform X3 [Jatropha curcas]
8 Hb_007547_010 0.1039470369 - - PREDICTED: diphthamide biosynthesis protein 1 [Jatropha curcas]
9 Hb_011224_080 0.1066439419 - - PREDICTED: coiled-coil domain-containing protein 22 homolog isoform X1 [Jatropha curcas]
10 Hb_005928_060 0.1086971535 - - DNA-directed RNA polymerase III 25 kD polypeptide, putative [Ricinus communis]
11 Hb_000733_060 0.1131016859 - - PREDICTED: protein GUCD1 isoform X1 [Jatropha curcas]
12 Hb_001135_160 0.1132208684 - - PREDICTED: elongator complex protein 6 [Jatropha curcas]
13 Hb_132835_010 0.1149337987 - - PREDICTED: RING-H2 finger protein ATL8-like isoform X2 [Jatropha curcas]
14 Hb_021443_070 0.1149452267 - - PREDICTED: cysteine and histidine-rich domain-containing protein RAR1 isoform X1 [Jatropha curcas]
15 Hb_000556_080 0.1150804172 - - PREDICTED: synaptotagmin-5 [Pyrus x bretschneideri]
16 Hb_000160_170 0.1164783528 - - hypothetical protein JCGZ_02506 [Jatropha curcas]
17 Hb_000025_200 0.1171021602 - - PREDICTED: cell division control protein 2 homolog A isoform X1 [Jatropha curcas]
18 Hb_007426_230 0.1171703305 - - hypothetical protein CICLE_v10017932mg [Citrus clementina]
19 Hb_000417_180 0.1176946737 - - 60S ribosomal protein L11, putative [Ricinus communis]
20 Hb_073171_110 0.1204271745 - - PREDICTED: lysM domain receptor-like kinase 3 [Jatropha curcas]

Gene co-expression network

sample Hb_000352_110 Hb_000352_110 Hb_002973_080 Hb_002973_080 Hb_000352_110--Hb_002973_080 Hb_001629_110 Hb_001629_110 Hb_000352_110--Hb_001629_110 Hb_000330_050 Hb_000330_050 Hb_000352_110--Hb_000330_050 Hb_007575_040 Hb_007575_040 Hb_000352_110--Hb_007575_040 Hb_000172_370 Hb_000172_370 Hb_000352_110--Hb_000172_370 Hb_010638_020 Hb_010638_020 Hb_000352_110--Hb_010638_020 Hb_000025_200 Hb_000025_200 Hb_002973_080--Hb_000025_200 Hb_004970_200 Hb_004970_200 Hb_002973_080--Hb_004970_200 Hb_000001_020 Hb_000001_020 Hb_002973_080--Hb_000001_020 Hb_000107_390 Hb_000107_390 Hb_002973_080--Hb_000107_390 Hb_002973_080--Hb_010638_020 Hb_007576_040 Hb_007576_040 Hb_001629_110--Hb_007576_040 Hb_000046_280 Hb_000046_280 Hb_001629_110--Hb_000046_280 Hb_001512_060 Hb_001512_060 Hb_001629_110--Hb_001512_060 Hb_000015_080 Hb_000015_080 Hb_001629_110--Hb_000015_080 Hb_063716_050 Hb_063716_050 Hb_001629_110--Hb_063716_050 Hb_012675_090 Hb_012675_090 Hb_001629_110--Hb_012675_090 Hb_000330_050--Hb_002973_080 Hb_001703_030 Hb_001703_030 Hb_000330_050--Hb_001703_030 Hb_132835_010 Hb_132835_010 Hb_000330_050--Hb_132835_010 Hb_031527_100 Hb_031527_100 Hb_000330_050--Hb_031527_100 Hb_000330_050--Hb_007575_040 Hb_007575_040--Hb_010638_020 Hb_098993_010 Hb_098993_010 Hb_007575_040--Hb_098993_010 Hb_000186_240 Hb_000186_240 Hb_007575_040--Hb_000186_240 Hb_010863_080 Hb_010863_080 Hb_007575_040--Hb_010863_080 Hb_003297_030 Hb_003297_030 Hb_007575_040--Hb_003297_030 Hb_148912_010 Hb_148912_010 Hb_000172_370--Hb_148912_010 Hb_003005_020 Hb_003005_020 Hb_000172_370--Hb_003005_020 Hb_010436_070 Hb_010436_070 Hb_000172_370--Hb_010436_070 Hb_003038_030 Hb_003038_030 Hb_000172_370--Hb_003038_030 Hb_118419_020 Hb_118419_020 Hb_000172_370--Hb_118419_020 Hb_004195_160 Hb_004195_160 Hb_000172_370--Hb_004195_160 Hb_182026_020 Hb_182026_020 Hb_010638_020--Hb_182026_020 Hb_001439_120 Hb_001439_120 Hb_010638_020--Hb_001439_120 Hb_010638_020--Hb_000186_240 Hb_011224_080 Hb_011224_080 Hb_010638_020--Hb_011224_080 Hb_000556_080 Hb_000556_080 Hb_010638_020--Hb_000556_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.0199 0.59798 1.54246 1.3055 8.44607 4.27535
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.12973 4.95127 5.10522 1.78384 1.70229

CAGE analysis