Hb_000330_050

Information

Type -
Description -
Location Contig330: 39453-43231
Sequence    

Annotation

kegg
ID rcu:RCOM_1594920
description Protein yrdA, putative
nr
ID XP_002510412.1
description Protein yrdA, putative [Ricinus communis]
swissprot
ID Q9FWR5
description Gamma carbonic anhydrase 1, mitochondrial OS=Arabidopsis thaliana GN=GAMMACA1 PE=1 SV=1
trembl
ID B9R7W9
description Protein yrdA, putative OS=Ricinus communis GN=RCOM_1594920 PE=4 SV=1
Gene Ontology
ID GO:0005747
description gamma carbonic anhydrase mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34691: 39631-43246 , PASA_asmbl_34692: 40393-40754
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000330_050 0.0 - - Protein yrdA, putative [Ricinus communis]
2 Hb_000352_110 0.0988092018 - - DNA topoisomerase II, putative [Ricinus communis]
3 Hb_002973_080 0.1029457195 - - PREDICTED: uncharacterized protein LOC105630313 [Jatropha curcas]
4 Hb_001703_030 0.1081921405 transcription factor TF Family: SET Ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplast precursor, putative [Ricinus communis]
5 Hb_132835_010 0.1092560942 - - PREDICTED: RING-H2 finger protein ATL8-like isoform X2 [Jatropha curcas]
6 Hb_031527_100 0.1166976106 - - conserved hypothetical protein [Ricinus communis]
7 Hb_007575_040 0.1174499874 transcription factor TF Family: bZIP PREDICTED: transcription factor VIP1-like [Jatropha curcas]
8 Hb_000510_140 0.1200980094 - - PREDICTED: E3 ubiquitin protein ligase DRIP2 [Jatropha curcas]
9 Hb_000175_440 0.1206976314 - - signal peptidase family protein [Populus trichocarpa]
10 Hb_000046_280 0.1211735834 - - PREDICTED: uncharacterized protein LOC105631831 isoform X1 [Jatropha curcas]
11 Hb_085781_010 0.1242338698 - - PREDICTED: protein root UVB sensitive 4 [Jatropha curcas]
12 Hb_014720_160 0.1256230279 - - PREDICTED: anthranilate phosphoribosyltransferase, chloroplastic [Jatropha curcas]
13 Hb_008085_030 0.126483545 - - PREDICTED: uncharacterized protein LOC105639414 [Jatropha curcas]
14 Hb_000997_210 0.1265787349 - - PREDICTED: protein transport protein sec23-1 [Jatropha curcas]
15 Hb_010795_010 0.1291229461 - - protein with unknown function [Ricinus communis]
16 Hb_000069_110 0.1305294005 - - PREDICTED: nephrocystin-3-like isoform X2 [Jatropha curcas]
17 Hb_000025_200 0.1311984994 - - PREDICTED: cell division control protein 2 homolog A isoform X1 [Jatropha curcas]
18 Hb_007304_110 0.1314265028 - - PREDICTED: type I inositol 1,4,5-trisphosphate 5-phosphatase 1 isoform X3 [Jatropha curcas]
19 Hb_000030_010 0.132011986 - - PREDICTED: uncharacterized protein LOC105632627 [Jatropha curcas]
20 Hb_021443_070 0.1336837624 - - PREDICTED: cysteine and histidine-rich domain-containing protein RAR1 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000330_050 Hb_000330_050 Hb_000352_110 Hb_000352_110 Hb_000330_050--Hb_000352_110 Hb_002973_080 Hb_002973_080 Hb_000330_050--Hb_002973_080 Hb_001703_030 Hb_001703_030 Hb_000330_050--Hb_001703_030 Hb_132835_010 Hb_132835_010 Hb_000330_050--Hb_132835_010 Hb_031527_100 Hb_031527_100 Hb_000330_050--Hb_031527_100 Hb_007575_040 Hb_007575_040 Hb_000330_050--Hb_007575_040 Hb_000352_110--Hb_002973_080 Hb_001629_110 Hb_001629_110 Hb_000352_110--Hb_001629_110 Hb_000352_110--Hb_007575_040 Hb_000172_370 Hb_000172_370 Hb_000352_110--Hb_000172_370 Hb_010638_020 Hb_010638_020 Hb_000352_110--Hb_010638_020 Hb_000025_200 Hb_000025_200 Hb_002973_080--Hb_000025_200 Hb_004970_200 Hb_004970_200 Hb_002973_080--Hb_004970_200 Hb_000001_020 Hb_000001_020 Hb_002973_080--Hb_000001_020 Hb_000107_390 Hb_000107_390 Hb_002973_080--Hb_000107_390 Hb_002973_080--Hb_010638_020 Hb_000046_280 Hb_000046_280 Hb_001703_030--Hb_000046_280 Hb_012799_180 Hb_012799_180 Hb_001703_030--Hb_012799_180 Hb_009838_080 Hb_009838_080 Hb_001703_030--Hb_009838_080 Hb_001703_030--Hb_132835_010 Hb_011867_010 Hb_011867_010 Hb_001703_030--Hb_011867_010 Hb_017904_010 Hb_017904_010 Hb_001703_030--Hb_017904_010 Hb_010655_010 Hb_010655_010 Hb_132835_010--Hb_010655_010 Hb_004440_090 Hb_004440_090 Hb_132835_010--Hb_004440_090 Hb_000069_110 Hb_000069_110 Hb_132835_010--Hb_000069_110 Hb_002609_020 Hb_002609_020 Hb_132835_010--Hb_002609_020 Hb_001975_140 Hb_001975_140 Hb_132835_010--Hb_001975_140 Hb_004837_190 Hb_004837_190 Hb_031527_100--Hb_004837_190 Hb_005503_030 Hb_005503_030 Hb_031527_100--Hb_005503_030 Hb_054865_100 Hb_054865_100 Hb_031527_100--Hb_054865_100 Hb_008887_050 Hb_008887_050 Hb_031527_100--Hb_008887_050 Hb_000327_120 Hb_000327_120 Hb_031527_100--Hb_000327_120 Hb_000477_030 Hb_000477_030 Hb_031527_100--Hb_000477_030 Hb_007575_040--Hb_010638_020 Hb_098993_010 Hb_098993_010 Hb_007575_040--Hb_098993_010 Hb_000186_240 Hb_000186_240 Hb_007575_040--Hb_000186_240 Hb_010863_080 Hb_010863_080 Hb_007575_040--Hb_010863_080 Hb_003297_030 Hb_003297_030 Hb_007575_040--Hb_003297_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.93668 1.60206 4.92783 1.78685 12.9833 6.62025
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.77097 6.07665 10.6694 2.87118 3.3476

CAGE analysis