Hb_002233_090

Information

Type -
Description -
Location Contig2233: 72515-89607
Sequence    

Annotation

kegg
ID rcu:RCOM_0759490
description bromodomain-containing protein, putative
nr
ID XP_012066661.1
description PREDICTED: bromodomain-containing protein 3 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067L5C8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00235 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23153: 72792-73026 , PASA_asmbl_23154: 76786-77735
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002233_090 0.0 - - PREDICTED: bromodomain-containing protein 3 [Jatropha curcas]
2 Hb_109168_010 0.1272562539 - - protein farnesyltransferase alpha subunit, putative [Ricinus communis]
3 Hb_001959_050 0.1481968703 - - PREDICTED: uncharacterized protein LOC103323811 isoform X1 [Prunus mume]
4 Hb_000395_140 0.1497181255 - - Oligopeptide transporter, putative [Ricinus communis]
5 Hb_001040_170 0.1537612486 - - PREDICTED: pentatricopeptide repeat-containing protein At4g21705, mitochondrial isoform X1 [Jatropha curcas]
6 Hb_006091_030 0.1556734145 desease resistance Gene Name: AAA PREDICTED: cell division control protein 48 homolog C-like isoform X1 [Jatropha curcas]
7 Hb_000926_120 0.1558139203 - - PREDICTED: aspartic proteinase A1-like [Jatropha curcas]
8 Hb_051407_010 0.1559602935 - - protein farnesyltransferase alpha subunit, putative [Ricinus communis]
9 Hb_007447_010 0.1561132647 - - PREDICTED: CBS domain-containing protein CBSCBSPB3 isoform X3 [Jatropha curcas]
10 Hb_010436_030 0.1587820584 - - Ribonuclease III, putative [Ricinus communis]
11 Hb_000077_130 0.1595634555 - - PREDICTED: callose synthase 12 [Jatropha curcas]
12 Hb_012055_020 0.1620356037 - - PREDICTED: metal transporter Nramp3 [Jatropha curcas]
13 Hb_000384_040 0.1623348865 - - PREDICTED: uncharacterized protein LOC105640093 [Jatropha curcas]
14 Hb_000208_290 0.1638176671 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 2 isoform X2 [Jatropha curcas]
15 Hb_000016_110 0.1656009393 - - PREDICTED: pentatricopeptide repeat-containing protein At4g38010 [Jatropha curcas]
16 Hb_189118_010 0.1660011805 - - PREDICTED: extended synaptotagmin-1 [Cucumis melo]
17 Hb_000270_140 0.1676509102 - - PREDICTED: uncharacterized protein LOC105640478 isoform X1 [Jatropha curcas]
18 Hb_006026_040 0.1681150963 - - PREDICTED: 60S ribosomal protein L13a-4-like [Jatropha curcas]
19 Hb_000038_030 0.1681667573 - - PREDICTED: probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 7-like [Glycine max]
20 Hb_034083_010 0.1685498932 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_002233_090 Hb_002233_090 Hb_109168_010 Hb_109168_010 Hb_002233_090--Hb_109168_010 Hb_001959_050 Hb_001959_050 Hb_002233_090--Hb_001959_050 Hb_000395_140 Hb_000395_140 Hb_002233_090--Hb_000395_140 Hb_001040_170 Hb_001040_170 Hb_002233_090--Hb_001040_170 Hb_006091_030 Hb_006091_030 Hb_002233_090--Hb_006091_030 Hb_000926_120 Hb_000926_120 Hb_002233_090--Hb_000926_120 Hb_007441_070 Hb_007441_070 Hb_109168_010--Hb_007441_070 Hb_002587_020 Hb_002587_020 Hb_109168_010--Hb_002587_020 Hb_011316_110 Hb_011316_110 Hb_109168_010--Hb_011316_110 Hb_001504_160 Hb_001504_160 Hb_109168_010--Hb_001504_160 Hb_041091_010 Hb_041091_010 Hb_109168_010--Hb_041091_010 Hb_000048_140 Hb_000048_140 Hb_109168_010--Hb_000048_140 Hb_001959_050--Hb_109168_010 Hb_007304_110 Hb_007304_110 Hb_001959_050--Hb_007304_110 Hb_007447_010 Hb_007447_010 Hb_001959_050--Hb_007447_010 Hb_003030_020 Hb_003030_020 Hb_001959_050--Hb_003030_020 Hb_073171_110 Hb_073171_110 Hb_001959_050--Hb_073171_110 Hb_001136_100 Hb_001136_100 Hb_001959_050--Hb_001136_100 Hb_001357_190 Hb_001357_190 Hb_000395_140--Hb_001357_190 Hb_006029_010 Hb_006029_010 Hb_000395_140--Hb_006029_010 Hb_002675_190 Hb_002675_190 Hb_000395_140--Hb_002675_190 Hb_000771_160 Hb_000771_160 Hb_000395_140--Hb_000771_160 Hb_000208_290 Hb_000208_290 Hb_000395_140--Hb_000208_290 Hb_000161_030 Hb_000161_030 Hb_000395_140--Hb_000161_030 Hb_000107_100 Hb_000107_100 Hb_001040_170--Hb_000107_100 Hb_001040_170--Hb_006091_030 Hb_017168_010 Hb_017168_010 Hb_001040_170--Hb_017168_010 Hb_000327_240 Hb_000327_240 Hb_001040_170--Hb_000327_240 Hb_005237_010 Hb_005237_010 Hb_001040_170--Hb_005237_010 Hb_000340_510 Hb_000340_510 Hb_001040_170--Hb_000340_510 Hb_000490_030 Hb_000490_030 Hb_006091_030--Hb_000490_030 Hb_000358_080 Hb_000358_080 Hb_006091_030--Hb_000358_080 Hb_002874_070 Hb_002874_070 Hb_006091_030--Hb_002874_070 Hb_000016_110 Hb_000016_110 Hb_006091_030--Hb_000016_110 Hb_000413_130 Hb_000413_130 Hb_006091_030--Hb_000413_130 Hb_000078_130 Hb_000078_130 Hb_006091_030--Hb_000078_130 Hb_005295_040 Hb_005295_040 Hb_000926_120--Hb_005295_040 Hb_005635_010 Hb_005635_010 Hb_000926_120--Hb_005635_010 Hb_000136_150 Hb_000136_150 Hb_000926_120--Hb_000136_150 Hb_031754_010 Hb_031754_010 Hb_000926_120--Hb_031754_010 Hb_001433_190 Hb_001433_190 Hb_000926_120--Hb_001433_190 Hb_000631_150 Hb_000631_150 Hb_000926_120--Hb_000631_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.54356 1.05692 0.591535 0.434492 10.6785 8.25799
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.5343 1.62071 5.30887 3.76125 1.54063

CAGE analysis