Hb_001959_050

Information

Type -
Description -
Location Contig1959: 59836-77030
Sequence    

Annotation

kegg
ID pmum:103323811
description uncharacterized LOC103323811
nr
ID XP_008224052.1
description PREDICTED: uncharacterized protein LOC103323811 isoform X1 [Prunus mume]
swissprot
ID A2AH22
description Activating molecule in BECN1-regulated autophagy protein 1 OS=Mus musculus GN=Ambra1 PE=1 SV=1
trembl
ID B9RWS8
description Nucleotide binding protein, putative OS=Ricinus communis GN=RCOM_1023990 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19622: 58948-76159
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001959_050 0.0 - - PREDICTED: uncharacterized protein LOC103323811 isoform X1 [Prunus mume]
2 Hb_109168_010 0.1174726964 - - protein farnesyltransferase alpha subunit, putative [Ricinus communis]
3 Hb_007304_110 0.1201916305 - - PREDICTED: type I inositol 1,4,5-trisphosphate 5-phosphatase 1 isoform X3 [Jatropha curcas]
4 Hb_007447_010 0.1251736726 - - PREDICTED: CBS domain-containing protein CBSCBSPB3 isoform X3 [Jatropha curcas]
5 Hb_003030_020 0.1266534665 - - PREDICTED: uncharacterized protein LOC105632544 [Jatropha curcas]
6 Hb_073171_110 0.1274156319 - - PREDICTED: lysM domain receptor-like kinase 3 [Jatropha curcas]
7 Hb_001136_100 0.1278781184 - - hypothetical protein MTR_085s0013 [Medicago truncatula]
8 Hb_000363_460 0.1280061054 - - PREDICTED: grpE protein homolog, mitochondrial isoform X1 [Jatropha curcas]
9 Hb_010436_030 0.1323364975 - - Ribonuclease III, putative [Ricinus communis]
10 Hb_001040_170 0.134047121 - - PREDICTED: pentatricopeptide repeat-containing protein At4g21705, mitochondrial isoform X1 [Jatropha curcas]
11 Hb_006130_010 0.1340986413 - - PREDICTED: CTP synthase [Jatropha curcas]
12 Hb_003001_150 0.1375360462 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
13 Hb_003506_080 0.1401212699 - - dipeptidyl peptidase IV, putative [Ricinus communis]
14 Hb_011316_110 0.1405989236 - - PREDICTED: receptor-like serine/threonine-protein kinase At4g25390 [Jatropha curcas]
15 Hb_008247_010 0.1433360016 - - PREDICTED: leucine--tRNA ligase, cytoplasmic [Jatropha curcas]
16 Hb_000352_110 0.1475999224 - - DNA topoisomerase II, putative [Ricinus communis]
17 Hb_007943_100 0.1481635037 - - unnamed protein product [Coffea canephora]
18 Hb_002233_090 0.1481968703 - - PREDICTED: bromodomain-containing protein 3 [Jatropha curcas]
19 Hb_011344_010 0.1489058197 - - PREDICTED: NADH dehydrogenase (ubiquinone) complex I, assembly factor 6 [Jatropha curcas]
20 Hb_000028_040 0.1496187207 - - PREDICTED: prostaglandin E synthase 2-like [Jatropha curcas]

Gene co-expression network

sample Hb_001959_050 Hb_001959_050 Hb_109168_010 Hb_109168_010 Hb_001959_050--Hb_109168_010 Hb_007304_110 Hb_007304_110 Hb_001959_050--Hb_007304_110 Hb_007447_010 Hb_007447_010 Hb_001959_050--Hb_007447_010 Hb_003030_020 Hb_003030_020 Hb_001959_050--Hb_003030_020 Hb_073171_110 Hb_073171_110 Hb_001959_050--Hb_073171_110 Hb_001136_100 Hb_001136_100 Hb_001959_050--Hb_001136_100 Hb_007441_070 Hb_007441_070 Hb_109168_010--Hb_007441_070 Hb_002587_020 Hb_002587_020 Hb_109168_010--Hb_002587_020 Hb_011316_110 Hb_011316_110 Hb_109168_010--Hb_011316_110 Hb_001504_160 Hb_001504_160 Hb_109168_010--Hb_001504_160 Hb_041091_010 Hb_041091_010 Hb_109168_010--Hb_041091_010 Hb_000048_140 Hb_000048_140 Hb_109168_010--Hb_000048_140 Hb_000363_460 Hb_000363_460 Hb_007304_110--Hb_000363_460 Hb_007943_100 Hb_007943_100 Hb_007304_110--Hb_007943_100 Hb_000358_150 Hb_000358_150 Hb_007304_110--Hb_000358_150 Hb_007304_110--Hb_001136_100 Hb_001322_170 Hb_001322_170 Hb_007304_110--Hb_001322_170 Hb_001136_090 Hb_001136_090 Hb_007304_110--Hb_001136_090 Hb_007447_010--Hb_011316_110 Hb_000077_050 Hb_000077_050 Hb_007447_010--Hb_000077_050 Hb_000107_100 Hb_000107_100 Hb_007447_010--Hb_000107_100 Hb_022256_040 Hb_022256_040 Hb_007447_010--Hb_022256_040 Hb_001040_170 Hb_001040_170 Hb_007447_010--Hb_001040_170 Hb_001584_110 Hb_001584_110 Hb_007447_010--Hb_001584_110 Hb_003030_020--Hb_073171_110 Hb_000723_260 Hb_000723_260 Hb_003030_020--Hb_000723_260 Hb_185467_020 Hb_185467_020 Hb_003030_020--Hb_185467_020 Hb_000997_210 Hb_000997_210 Hb_003030_020--Hb_000997_210 Hb_012340_010 Hb_012340_010 Hb_003030_020--Hb_012340_010 Hb_003030_020--Hb_001040_170 Hb_073171_110--Hb_012340_010 Hb_000556_080 Hb_000556_080 Hb_073171_110--Hb_000556_080 Hb_009048_040 Hb_009048_040 Hb_073171_110--Hb_009048_040 Hb_073171_110--Hb_000997_210 Hb_012055_020 Hb_012055_020 Hb_073171_110--Hb_012055_020 Hb_001136_100--Hb_001136_090 Hb_002367_130 Hb_002367_130 Hb_001136_100--Hb_002367_130 Hb_012132_030 Hb_012132_030 Hb_001136_100--Hb_012132_030 Hb_003001_150 Hb_003001_150 Hb_001136_100--Hb_003001_150 Hb_000207_310 Hb_000207_310 Hb_001136_100--Hb_000207_310
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.99246 0.148856 0.415096 0.282149 2.49793 1.6336
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.450368 0.850471 1.31044 0.669648 0.674047

CAGE analysis