Hb_003030_020

Information

Type -
Description -
Location Contig3030: 41079-48007
Sequence    

Annotation

kegg
ID pop:POPTR_0013s06510g
description POPTRDRAFT_571307; hypothetical protein
nr
ID XP_012070334.1
description PREDICTED: uncharacterized protein LOC105632544 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KTY4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02637 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31962: 41676-42263 , PASA_asmbl_31964: 43654-43862 , PASA_asmbl_31966: 44626-47900
cDNA
(Sanger)
(ID:Location)		 004_G24.ab1: 47649-47785 , 019_F20.ab1: 47649-47785

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003030_020 0.0 - - PREDICTED: uncharacterized protein LOC105632544 [Jatropha curcas]
2 Hb_073171_110 0.086220437 - - PREDICTED: lysM domain receptor-like kinase 3 [Jatropha curcas]
3 Hb_000723_260 0.094761492 - - ethylene insensitive protein, putative [Ricinus communis]
4 Hb_185467_020 0.1037248159 - - Cucumisin precursor, putative [Ricinus communis]
5 Hb_000997_210 0.1051477116 - - PREDICTED: protein transport protein sec23-1 [Jatropha curcas]
6 Hb_012340_010 0.1055970022 - - PREDICTED: B-cell receptor-associated protein 31 [Jatropha curcas]
7 Hb_001040_170 0.111050655 - - PREDICTED: pentatricopeptide repeat-containing protein At4g21705, mitochondrial isoform X1 [Jatropha curcas]
8 Hb_174541_020 0.1120549668 - - PREDICTED: cysteine proteinase inhibitor 6-like [Populus euphratica]
9 Hb_001252_080 0.1126825179 - - PREDICTED: eukaryotic translation initiation factor 3 subunit G-like [Jatropha curcas]
10 Hb_002890_340 0.1139047835 - - PREDICTED: uncharacterized protein LOC105631583 isoform X2 [Jatropha curcas]
11 Hb_003195_060 0.1147102481 - - PREDICTED: transmembrane protein 184 homolog DDB_G0279555 [Jatropha curcas]
12 Hb_002609_110 0.1180027641 - - hypothetical protein JCGZ_08497 [Jatropha curcas]
13 Hb_098993_010 0.1184515124 - - PREDICTED: chaperone protein dnaJ 72 isoform X2 [Jatropha curcas]
14 Hb_000576_030 0.1184520721 - - PREDICTED: pentatricopeptide repeat-containing protein At2g20540 [Jatropha curcas]
15 Hb_010436_030 0.1203607097 - - Ribonuclease III, putative [Ricinus communis]
16 Hb_000236_250 0.1209268129 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000538_200 0.1211650126 - - PREDICTED: pentatricopeptide repeat-containing protein At2g22070-like [Jatropha curcas]
18 Hb_007558_140 0.1214270533 - - PREDICTED: phospholipid-transporting ATPase 1-like [Jatropha curcas]
19 Hb_001538_010 0.1220480746 - - -
20 Hb_008695_180 0.122114592 - - eukaryotic translation initiation factor [Hevea brasiliensis]

Gene co-expression network

sample Hb_003030_020 Hb_003030_020 Hb_073171_110 Hb_073171_110 Hb_003030_020--Hb_073171_110 Hb_000723_260 Hb_000723_260 Hb_003030_020--Hb_000723_260 Hb_185467_020 Hb_185467_020 Hb_003030_020--Hb_185467_020 Hb_000997_210 Hb_000997_210 Hb_003030_020--Hb_000997_210 Hb_012340_010 Hb_012340_010 Hb_003030_020--Hb_012340_010 Hb_001040_170 Hb_001040_170 Hb_003030_020--Hb_001040_170 Hb_073171_110--Hb_012340_010 Hb_000556_080 Hb_000556_080 Hb_073171_110--Hb_000556_080 Hb_009048_040 Hb_009048_040 Hb_073171_110--Hb_009048_040 Hb_073171_110--Hb_000997_210 Hb_012055_020 Hb_012055_020 Hb_073171_110--Hb_012055_020 Hb_000152_820 Hb_000152_820 Hb_000723_260--Hb_000152_820 Hb_000538_200 Hb_000538_200 Hb_000723_260--Hb_000538_200 Hb_002150_030 Hb_002150_030 Hb_000723_260--Hb_002150_030 Hb_000317_020 Hb_000317_020 Hb_000723_260--Hb_000317_020 Hb_007586_030 Hb_007586_030 Hb_000723_260--Hb_007586_030 Hb_007757_110 Hb_007757_110 Hb_000723_260--Hb_007757_110 Hb_008453_150 Hb_008453_150 Hb_185467_020--Hb_008453_150 Hb_002631_050 Hb_002631_050 Hb_185467_020--Hb_002631_050 Hb_002874_070 Hb_002874_070 Hb_185467_020--Hb_002874_070 Hb_000803_150 Hb_000803_150 Hb_185467_020--Hb_000803_150 Hb_001936_050 Hb_001936_050 Hb_185467_020--Hb_001936_050 Hb_001981_070 Hb_001981_070 Hb_185467_020--Hb_001981_070 Hb_007558_140 Hb_007558_140 Hb_000997_210--Hb_007558_140 Hb_153258_010 Hb_153258_010 Hb_000997_210--Hb_153258_010 Hb_098993_010 Hb_098993_010 Hb_000997_210--Hb_098993_010 Hb_002027_130 Hb_002027_130 Hb_000997_210--Hb_002027_130 Hb_002299_060 Hb_002299_060 Hb_000997_210--Hb_002299_060 Hb_182026_020 Hb_182026_020 Hb_012340_010--Hb_182026_020 Hb_012340_010--Hb_000556_080 Hb_010638_020 Hb_010638_020 Hb_012340_010--Hb_010638_020 Hb_012340_010--Hb_098993_010 Hb_000107_100 Hb_000107_100 Hb_001040_170--Hb_000107_100 Hb_006091_030 Hb_006091_030 Hb_001040_170--Hb_006091_030 Hb_017168_010 Hb_017168_010 Hb_001040_170--Hb_017168_010 Hb_000327_240 Hb_000327_240 Hb_001040_170--Hb_000327_240 Hb_005237_010 Hb_005237_010 Hb_001040_170--Hb_005237_010 Hb_000340_510 Hb_000340_510 Hb_001040_170--Hb_000340_510
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
18.462 5.72344 3.05102 7.74551 29.1964 27.1939
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.12281 15.5778 27.3663 9.37463 7.90638

CAGE analysis