Hb_000926_120

Information

Type -
Description -
Location Contig926: 126944-132847
Sequence    

Annotation

kegg
ID rcu:RCOM_1303660
description Aspartic proteinase precursor, putative (EC:3.4.23.40)
nr
ID XP_012070867.1
description PREDICTED: aspartic proteinase A1-like [Jatropha curcas]
swissprot
ID O65390
description Aspartic proteinase A1 OS=Arabidopsis thaliana GN=APA1 PE=1 SV=1
trembl
ID A0A067L506
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00916 PE=3 SV=1
Gene Ontology
ID GO:0004190
description aspartic proteinase a1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62666: 127001-132777 , PASA_asmbl_62667: 132247-132392 , PASA_asmbl_62668: 132780-133070
cDNA
(Sanger)
(ID:Location)		 038_D08.ab1: 129604-132759

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000926_120 0.0 - - PREDICTED: aspartic proteinase A1-like [Jatropha curcas]
2 Hb_005295_040 0.0998211577 - - PREDICTED: polyadenylate-binding protein RBP47-like [Jatropha curcas]
3 Hb_005635_010 0.1109262762 - - PREDICTED: cleft lip and palate transmembrane protein 1 homolog [Jatropha curcas]
4 Hb_000136_150 0.1113696615 - - hypothetical protein VITISV_038366 [Vitis vinifera]
5 Hb_031754_010 0.1121566851 transcription factor TF Family: LIM zinc ion binding protein, putative [Ricinus communis]
6 Hb_001433_190 0.1127709668 - - PREDICTED: eukaryotic translation initiation factor 3 subunit A [Jatropha curcas]
7 Hb_000631_150 0.1131439336 - - PREDICTED: RNA polymerase-associated protein LEO1 [Jatropha curcas]
8 Hb_007904_220 0.1134663992 - - PREDICTED: protein SDA1 homolog isoform X1 [Jatropha curcas]
9 Hb_004608_020 0.1134870099 - - PREDICTED: leucine aminopeptidase 1-like [Jatropha curcas]
10 Hb_005205_020 0.1136079337 - - PREDICTED: protein FAM135B-like isoform X2 [Jatropha curcas]
11 Hb_000078_100 0.1175848118 - - PREDICTED: topless-related protein 4-like isoform X2 [Jatropha curcas]
12 Hb_028639_010 0.1178367168 - - transporter, putative [Ricinus communis]
13 Hb_000849_100 0.1181290679 - - PREDICTED: uncharacterized protein LOC105644134 [Jatropha curcas]
14 Hb_000048_140 0.1183345975 - - PREDICTED: eukaryotic peptide chain release factor GTP-binding subunit ERF3A isoform X3 [Jatropha curcas]
15 Hb_000317_440 0.1197976615 - - PREDICTED: zinc finger CCCH domain-containing protein 13 isoform X2 [Jatropha curcas]
16 Hb_022250_110 0.1205068407 - - PREDICTED: staphylococcal nuclease domain-containing protein 1 [Jatropha curcas]
17 Hb_004221_050 0.1209523451 - - PREDICTED: probable serine/threonine-protein kinase At1g01540 [Jatropha curcas]
18 Hb_007441_070 0.1211176475 - - hypothetical protein PRUPE_ppa004494mg [Prunus persica]
19 Hb_109168_010 0.1214184954 - - protein farnesyltransferase alpha subunit, putative [Ricinus communis]
20 Hb_002067_150 0.1217664438 - - PREDICTED: ankyrin repeat protein SKIP35 [Jatropha curcas]

Gene co-expression network

sample Hb_000926_120 Hb_000926_120 Hb_005295_040 Hb_005295_040 Hb_000926_120--Hb_005295_040 Hb_005635_010 Hb_005635_010 Hb_000926_120--Hb_005635_010 Hb_000136_150 Hb_000136_150 Hb_000926_120--Hb_000136_150 Hb_031754_010 Hb_031754_010 Hb_000926_120--Hb_031754_010 Hb_001433_190 Hb_001433_190 Hb_000926_120--Hb_001433_190 Hb_000631_150 Hb_000631_150 Hb_000926_120--Hb_000631_150 Hb_004724_360 Hb_004724_360 Hb_005295_040--Hb_004724_360 Hb_002725_070 Hb_002725_070 Hb_005295_040--Hb_002725_070 Hb_001975_020 Hb_001975_020 Hb_005295_040--Hb_001975_020 Hb_000367_290 Hb_000367_290 Hb_005295_040--Hb_000367_290 Hb_005295_040--Hb_005635_010 Hb_000327_310 Hb_000327_310 Hb_005295_040--Hb_000327_310 Hb_000814_090 Hb_000814_090 Hb_005635_010--Hb_000814_090 Hb_001040_160 Hb_001040_160 Hb_005635_010--Hb_001040_160 Hb_005635_010--Hb_002725_070 Hb_003299_090 Hb_003299_090 Hb_005635_010--Hb_003299_090 Hb_000078_100 Hb_000078_100 Hb_005635_010--Hb_000078_100 Hb_000317_440 Hb_000317_440 Hb_000136_150--Hb_000317_440 Hb_001486_120 Hb_001486_120 Hb_000136_150--Hb_001486_120 Hb_016657_020 Hb_016657_020 Hb_000136_150--Hb_016657_020 Hb_001437_100 Hb_001437_100 Hb_000136_150--Hb_001437_100 Hb_002883_010 Hb_002883_010 Hb_000136_150--Hb_002883_010 Hb_000805_310 Hb_000805_310 Hb_000136_150--Hb_000805_310 Hb_000335_010 Hb_000335_010 Hb_031754_010--Hb_000335_010 Hb_031754_010--Hb_001975_020 Hb_000035_040 Hb_000035_040 Hb_031754_010--Hb_000035_040 Hb_031754_010--Hb_002883_010 Hb_046615_020 Hb_046615_020 Hb_031754_010--Hb_046615_020 Hb_000424_010 Hb_000424_010 Hb_031754_010--Hb_000424_010 Hb_001278_060 Hb_001278_060 Hb_001433_190--Hb_001278_060 Hb_005129_050 Hb_005129_050 Hb_001433_190--Hb_005129_050 Hb_001433_190--Hb_002883_010 Hb_007849_020 Hb_007849_020 Hb_001433_190--Hb_007849_020 Hb_001196_070 Hb_001196_070 Hb_001433_190--Hb_001196_070 Hb_006002_030 Hb_006002_030 Hb_001433_190--Hb_006002_030 Hb_000631_150--Hb_000317_440 Hb_000134_360 Hb_000134_360 Hb_000631_150--Hb_000134_360 Hb_000849_100 Hb_000849_100 Hb_000631_150--Hb_000849_100 Hb_004608_020 Hb_004608_020 Hb_000631_150--Hb_004608_020 Hb_000318_140 Hb_000318_140 Hb_000631_150--Hb_000318_140 Hb_000631_150--Hb_031754_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
761.704 313.349 72.9966 277.545 1280.27 1194.64
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
367.117 159.712 526.848 537.308 176.88

CAGE analysis