Hb_123051_020

Information

Type -
Description -
Location Contig123051: 7611-9246
Sequence    

Annotation

kegg
ID pop:POPTR_2151s00200g
description hypothetical protein
nr
ID XP_006387026.1
description hypothetical protein POPTR_2151s00200g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID U7DSR2
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_2151s00200g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_123051_020 0.0 - - hypothetical protein POPTR_2151s00200g [Populus trichocarpa]
2 Hb_002489_010 0.2017989121 - - hypothetical protein JCGZ_17199 [Jatropha curcas]
3 Hb_001329_240 0.2105130251 - - hypothetical protein POPTR_0002s18920g [Populus trichocarpa]
4 Hb_000009_620 0.2170580239 - - zinc finger protein, putative [Ricinus communis]
5 Hb_024505_050 0.2245311871 transcription factor TF Family: ERF PPLZ02 family protein [Populus trichocarpa]
6 Hb_004348_010 0.2292389315 - - hypothetical protein POPTR_0077s002302g, partial [Populus trichocarpa]
7 Hb_155123_010 0.233365764 - - PREDICTED: uncharacterized protein LOC105634374 [Jatropha curcas]
8 Hb_004668_100 0.2366811941 - - -
9 Hb_001856_010 0.2450231868 - - DNA binding protein, putative [Ricinus communis]
10 Hb_001902_070 0.2450780997 - - ATP binding protein, putative [Ricinus communis]
11 Hb_004342_030 0.247352123 - - phosphofructokinase [Hevea brasiliensis]
12 Hb_006816_170 0.2506865411 - - PREDICTED: pyrophosphate-energized vacuolar membrane proton pump 1-like [Jatropha curcas]
13 Hb_028872_060 0.2528066019 - - PREDICTED: ankyrin-3-like [Jatropha curcas]
14 Hb_008376_010 0.2649700925 - - -
15 Hb_002407_080 0.2659667986 - - hypothetical protein JCGZ_00752 [Jatropha curcas]
16 Hb_004242_190 0.2689366309 - - Leucoanthocyanidin dioxygenase, putative [Ricinus communis]
17 Hb_000920_270 0.2724547202 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_24521 [Jatropha curcas]
18 Hb_003647_030 0.278891008 - - PREDICTED: probable glutathione S-transferase [Populus euphratica]
19 Hb_000340_340 0.2857383512 - - hypothetical protein POPTR_0014s13260g [Populus trichocarpa]
20 Hb_000038_030 0.2917729536 - - PREDICTED: probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 7-like [Glycine max]

Gene co-expression network

sample Hb_123051_020 Hb_123051_020 Hb_002489_010 Hb_002489_010 Hb_123051_020--Hb_002489_010 Hb_001329_240 Hb_001329_240 Hb_123051_020--Hb_001329_240 Hb_000009_620 Hb_000009_620 Hb_123051_020--Hb_000009_620 Hb_024505_050 Hb_024505_050 Hb_123051_020--Hb_024505_050 Hb_004348_010 Hb_004348_010 Hb_123051_020--Hb_004348_010 Hb_155123_010 Hb_155123_010 Hb_123051_020--Hb_155123_010 Hb_006816_170 Hb_006816_170 Hb_002489_010--Hb_006816_170 Hb_002045_130 Hb_002045_130 Hb_002489_010--Hb_002045_130 Hb_002489_010--Hb_024505_050 Hb_000792_070 Hb_000792_070 Hb_002489_010--Hb_000792_070 Hb_004116_200 Hb_004116_200 Hb_002489_010--Hb_004116_200 Hb_003893_010 Hb_003893_010 Hb_002489_010--Hb_003893_010 Hb_001329_240--Hb_024505_050 Hb_001329_240--Hb_006816_170 Hb_001247_200 Hb_001247_200 Hb_001329_240--Hb_001247_200 Hb_001329_240--Hb_002489_010 Hb_002131_040 Hb_002131_040 Hb_001329_240--Hb_002131_040 Hb_001856_010 Hb_001856_010 Hb_000009_620--Hb_001856_010 Hb_028872_060 Hb_028872_060 Hb_000009_620--Hb_028872_060 Hb_000828_040 Hb_000828_040 Hb_000009_620--Hb_000828_040 Hb_002407_080 Hb_002407_080 Hb_000009_620--Hb_002407_080 Hb_004342_030 Hb_004342_030 Hb_000009_620--Hb_004342_030 Hb_114310_040 Hb_114310_040 Hb_000009_620--Hb_114310_040 Hb_024505_050--Hb_006816_170 Hb_034299_040 Hb_034299_040 Hb_024505_050--Hb_034299_040 Hb_024505_050--Hb_002131_040 Hb_024505_050--Hb_004342_030 Hb_002239_040 Hb_002239_040 Hb_004348_010--Hb_002239_040 Hb_004348_010--Hb_006816_170 Hb_002311_250 Hb_002311_250 Hb_004348_010--Hb_002311_250 Hb_004129_120 Hb_004129_120 Hb_004348_010--Hb_004129_120 Hb_002374_440 Hb_002374_440 Hb_004348_010--Hb_002374_440 Hb_001902_070 Hb_001902_070 Hb_004348_010--Hb_001902_070 Hb_008376_010 Hb_008376_010 Hb_155123_010--Hb_008376_010 Hb_018133_120 Hb_018133_120 Hb_155123_010--Hb_018133_120 Hb_155123_010--Hb_028872_060 Hb_004738_020 Hb_004738_020 Hb_155123_010--Hb_004738_020 Hb_155123_010--Hb_001856_010 Hb_155123_010--Hb_004116_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.116508 0.120901 0 0 0.685292 0.330363
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.136454 0.214395 0.362452 0.758304 0

CAGE analysis