Hb_002131_040

Information

Type -
Description -
Location Contig2131: 71521-75284
Sequence    

Annotation

kegg
ID pop:POPTR_0001s02810g
description proton-dependent oligopeptide transport family protein
nr
ID XP_006368434.1
description proton-dependent oligopeptide transport family protein [Populus trichocarpa]
swissprot
ID Q9LQL2
description Protein NRT1/ PTR FAMILY 7.3 OS=Arabidopsis thaliana GN=NPF7.3 PE=1 SV=2
trembl
ID U5GN61
description Proton-dependent oligopeptide transport family protein OS=Populus trichocarpa GN=POPTR_0001s02810g PE=4 SV=1
Gene Ontology
ID GO:0016020
description proton-dependent oligopeptide transport family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22068: 72311-72897 , PASA_asmbl_22069: 74727-75353
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002131_040 0.0 - - proton-dependent oligopeptide transport family protein [Populus trichocarpa]
2 Hb_006816_170 0.2145314937 - - PREDICTED: pyrophosphate-energized vacuolar membrane proton pump 1-like [Jatropha curcas]
3 Hb_024505_050 0.2187220713 transcription factor TF Family: ERF PPLZ02 family protein [Populus trichocarpa]
4 Hb_001329_240 0.2316918859 - - hypothetical protein POPTR_0002s18920g [Populus trichocarpa]
5 Hb_008725_150 0.2425095674 - - endo-1,4-beta-glucanase, putative [Ricinus communis]
6 Hb_001247_200 0.250921702 - - PREDICTED: clathrin coat assembly protein AP180 [Jatropha curcas]
7 Hb_002374_430 0.2549729925 - - conserved hypothetical protein [Ricinus communis]
8 Hb_002489_010 0.2553975842 - - hypothetical protein JCGZ_17199 [Jatropha curcas]
9 Hb_002239_040 0.2591220115 - - Cellular apoptosis susceptibility protein / importin-alpha re-exporter, putative isoform 1 [Theobroma cacao]
10 Hb_058643_010 0.2607578688 - - hydrolase, putative [Ricinus communis]
11 Hb_000933_100 0.2618237269 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000384_030 0.2726851605 - - PREDICTED: uncharacterized protein LOC101310565 isoform X1 [Fragaria vesca subsp. vesca]
13 Hb_000566_030 0.2729413274 - - serine/threonine-protein kinase cx32, putative [Ricinus communis]
14 Hb_134469_010 0.2730137362 - - PREDICTED: protein argonaute 5 isoform X1 [Jatropha curcas]
15 Hb_000733_210 0.2737607324 - - putative serine/threonine protein phosphatase [Angiostrongylus costaricensis]
16 Hb_001009_080 0.2739171308 - - conserved hypothetical protein [Ricinus communis]
17 Hb_002260_080 0.2766320166 - - Aldehyde dehydrogenase family 6 member B2 [Morus notabilis]
18 Hb_027402_080 0.2767708403 - - PREDICTED: probable calcium-binding protein CML45 [Jatropha curcas]
19 Hb_001636_020 0.281349043 - - Serine/threonine-protein kinase PBS1 [Theobroma cacao]
20 Hb_048116_010 0.2814817135 - - PREDICTED: exocyst complex component EXO70A1 [Jatropha curcas]

Gene co-expression network

sample Hb_002131_040 Hb_002131_040 Hb_006816_170 Hb_006816_170 Hb_002131_040--Hb_006816_170 Hb_024505_050 Hb_024505_050 Hb_002131_040--Hb_024505_050 Hb_001329_240 Hb_001329_240 Hb_002131_040--Hb_001329_240 Hb_008725_150 Hb_008725_150 Hb_002131_040--Hb_008725_150 Hb_001247_200 Hb_001247_200 Hb_002131_040--Hb_001247_200 Hb_002374_430 Hb_002374_430 Hb_002131_040--Hb_002374_430 Hb_006816_170--Hb_001247_200 Hb_002489_010 Hb_002489_010 Hb_006816_170--Hb_002489_010 Hb_002239_040 Hb_002239_040 Hb_006816_170--Hb_002239_040 Hb_034299_040 Hb_034299_040 Hb_006816_170--Hb_034299_040 Hb_000384_030 Hb_000384_030 Hb_006816_170--Hb_000384_030 Hb_002233_090 Hb_002233_090 Hb_006816_170--Hb_002233_090 Hb_024505_050--Hb_001329_240 Hb_024505_050--Hb_006816_170 Hb_024505_050--Hb_002489_010 Hb_024505_050--Hb_034299_040 Hb_004342_030 Hb_004342_030 Hb_024505_050--Hb_004342_030 Hb_001329_240--Hb_006816_170 Hb_001329_240--Hb_001247_200 Hb_123051_020 Hb_123051_020 Hb_001329_240--Hb_123051_020 Hb_001329_240--Hb_002489_010 Hb_004316_070 Hb_004316_070 Hb_008725_150--Hb_004316_070 Hb_106321_030 Hb_106321_030 Hb_008725_150--Hb_106321_030 Hb_004137_060 Hb_004137_060 Hb_008725_150--Hb_004137_060 Hb_000832_130 Hb_000832_130 Hb_008725_150--Hb_000832_130 Hb_004767_090 Hb_004767_090 Hb_008725_150--Hb_004767_090 Hb_008725_150--Hb_002239_040 Hb_001247_200--Hb_000384_030 Hb_000926_120 Hb_000926_120 Hb_001247_200--Hb_000926_120 Hb_001152_030 Hb_001152_030 Hb_001247_200--Hb_001152_030 Hb_000984_050 Hb_000984_050 Hb_001247_200--Hb_000984_050 Hb_058643_010 Hb_058643_010 Hb_001247_200--Hb_058643_010 Hb_002374_430--Hb_008725_150 Hb_004137_070 Hb_004137_070 Hb_002374_430--Hb_004137_070 Hb_099864_010 Hb_099864_010 Hb_002374_430--Hb_099864_010 Hb_015707_010 Hb_015707_010 Hb_002374_430--Hb_015707_010 Hb_000608_060 Hb_000608_060 Hb_002374_430--Hb_000608_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.299201 2.1404 0.346327 2.41392 6.26104 3.25241
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.401622 0.382544 4.89627 5.93229 0.352094

CAGE analysis