Hb_004316_070

Information

Type -
Description -
Location Contig4316: 45414-49527
Sequence    

Annotation

kegg
ID pop:POPTR_0016s05980g
description POPTRDRAFT_777225; ubiquitin-protein ligase
nr
ID KHG09847.1
description E3 ubiquitin-protein ligase UPL5 -like protein [Gossypium arboreum]
swissprot
ID -
description -
trembl
ID A0A0B0NB33
description E3 ubiquitin-protein ligase UPL5-like protein OS=Gossypium arboreum GN=F383_11856 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004316_070 0.0 - - E3 ubiquitin-protein ligase UPL5 -like protein [Gossypium arboreum]
2 Hb_008725_150 0.1482665852 - - endo-1,4-beta-glucanase, putative [Ricinus communis]
3 Hb_106321_030 0.1568892134 - - PREDICTED: mitogen-activated protein kinase kinase kinase 1 [Jatropha curcas]
4 Hb_000106_040 0.1877141089 - - PREDICTED: pentatricopeptide repeat-containing protein At4g02750-like [Vitis vinifera]
5 Hb_002450_190 0.1929926133 - - Nonspecific lipid-transfer protein precursor, putative [Ricinus communis]
6 Hb_000200_140 0.1938721439 - - PREDICTED: uncharacterized protein LOC104591989 [Nelumbo nucifera]
7 Hb_001102_260 0.200024854 - - hypothetical protein L484_019841 [Morus notabilis]
8 Hb_004137_060 0.2002058999 - - PREDICTED: pentatricopeptide repeat-containing protein At3g09040, mitochondrial [Jatropha curcas]
9 Hb_000928_300 0.2008546938 - - PREDICTED: pentatricopeptide repeat-containing protein At3g03580 [Jatropha curcas]
10 Hb_002890_030 0.2042824713 desease resistance Gene Name: NB-ARC Disease resistance protein RGA2, putative [Ricinus communis]
11 Hb_031042_020 0.204787486 - - PREDICTED: putative pentatricopeptide repeat-containing protein At5g47460 [Jatropha curcas]
12 Hb_002986_130 0.2094928143 - - PREDICTED: pentatricopeptide repeat-containing protein DOT4, chloroplastic-like [Jatropha curcas]
13 Hb_005839_120 0.2100955735 - - PREDICTED: pentatricopeptide repeat-containing protein At4g02750-like [Jatropha curcas]
14 Hb_008643_060 0.2101367328 - - unnamed protein product [Coffea canephora]
15 Hb_000009_580 0.2113191158 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein Os03g0620400-like [Jatropha curcas]
16 Hb_003517_060 0.2119531591 - - hypothetical protein CISIN_1g044999mg, partial [Citrus sinensis]
17 Hb_000009_210 0.2123495613 - - PREDICTED: pentatricopeptide repeat-containing protein At2g01390 [Jatropha curcas]
18 Hb_000025_520 0.2139376695 - - PREDICTED: pentatricopeptide repeat-containing protein At5g27110 [Jatropha curcas]
19 Hb_005914_150 0.2142067289 - - PREDICTED: pentatricopeptide repeat-containing protein At4g19890 [Jatropha curcas]
20 Hb_189118_010 0.2145888479 - - PREDICTED: extended synaptotagmin-1 [Cucumis melo]

Gene co-expression network

sample Hb_004316_070 Hb_004316_070 Hb_008725_150 Hb_008725_150 Hb_004316_070--Hb_008725_150 Hb_106321_030 Hb_106321_030 Hb_004316_070--Hb_106321_030 Hb_000106_040 Hb_000106_040 Hb_004316_070--Hb_000106_040 Hb_002450_190 Hb_002450_190 Hb_004316_070--Hb_002450_190 Hb_000200_140 Hb_000200_140 Hb_004316_070--Hb_000200_140 Hb_001102_260 Hb_001102_260 Hb_004316_070--Hb_001102_260 Hb_008725_150--Hb_106321_030 Hb_004137_060 Hb_004137_060 Hb_008725_150--Hb_004137_060 Hb_000832_130 Hb_000832_130 Hb_008725_150--Hb_000832_130 Hb_004767_090 Hb_004767_090 Hb_008725_150--Hb_004767_090 Hb_002239_040 Hb_002239_040 Hb_008725_150--Hb_002239_040 Hb_002890_030 Hb_002890_030 Hb_106321_030--Hb_002890_030 Hb_003097_190 Hb_003097_190 Hb_106321_030--Hb_003097_190 Hb_010068_030 Hb_010068_030 Hb_106321_030--Hb_010068_030 Hb_000152_560 Hb_000152_560 Hb_106321_030--Hb_000152_560 Hb_029866_130 Hb_029866_130 Hb_106321_030--Hb_029866_130 Hb_029388_040 Hb_029388_040 Hb_106321_030--Hb_029388_040 Hb_000206_150 Hb_000206_150 Hb_000106_040--Hb_000206_150 Hb_000497_140 Hb_000497_140 Hb_000106_040--Hb_000497_140 Hb_005399_010 Hb_005399_010 Hb_000106_040--Hb_005399_010 Hb_000016_110 Hb_000016_110 Hb_000106_040--Hb_000016_110 Hb_000367_290 Hb_000367_290 Hb_000106_040--Hb_000367_290 Hb_000106_040--Hb_029866_130 Hb_005396_070 Hb_005396_070 Hb_002450_190--Hb_005396_070 Hb_001141_390 Hb_001141_390 Hb_002450_190--Hb_001141_390 Hb_000025_520 Hb_000025_520 Hb_002450_190--Hb_000025_520 Hb_096224_040 Hb_096224_040 Hb_002450_190--Hb_096224_040 Hb_006573_200 Hb_006573_200 Hb_002450_190--Hb_006573_200 Hb_004807_030 Hb_004807_030 Hb_002450_190--Hb_004807_030 Hb_000532_020 Hb_000532_020 Hb_000200_140--Hb_000532_020 Hb_000200_140--Hb_002890_030 Hb_004204_080 Hb_004204_080 Hb_000200_140--Hb_004204_080 Hb_002341_030 Hb_002341_030 Hb_000200_140--Hb_002341_030 Hb_005839_120 Hb_005839_120 Hb_000200_140--Hb_005839_120 Hb_008643_060 Hb_008643_060 Hb_000200_140--Hb_008643_060 Hb_005738_010 Hb_005738_010 Hb_001102_260--Hb_005738_010 Hb_027420_050 Hb_027420_050 Hb_001102_260--Hb_027420_050 Hb_020805_010 Hb_020805_010 Hb_001102_260--Hb_020805_010 Hb_001102_260--Hb_008725_150 Hb_000264_010 Hb_000264_010 Hb_001102_260--Hb_000264_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.107468 0.454678 0.0437044 0.104015 0.594668 0.545315
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0651746 0.273504 0.584011 0.108777 0.0361617

CAGE analysis