Hb_002450_190

Information

Type -
Description -
Location Contig2450: 115728-119691
Sequence    

Annotation

kegg
ID rcu:RCOM_1496730
description Nonspecific lipid-transfer protein precursor, putative
nr
ID XP_002510824.1
description Nonspecific lipid-transfer protein precursor, putative [Ricinus communis]
swissprot
ID Q9FIT2
description Putative non-specific lipid-transfer protein 14 OS=Arabidopsis thaliana GN=LTP14 PE=3 SV=2
trembl
ID B9R9E9
description Nonspecific lipid-transfer protein, putative OS=Ricinus communis GN=RCOM_1496730 PE=4 SV=1
Gene Ontology
ID GO:0008289
description non-specific lipid-transfer protein 14

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25572: 116633-117775
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002450_190 0.0 - - Nonspecific lipid-transfer protein precursor, putative [Ricinus communis]
2 Hb_005396_070 0.1290092258 - - hypothetical protein EUGRSUZ_B03067 [Eucalyptus grandis]
3 Hb_001141_390 0.1726556933 - - PREDICTED: uncharacterized protein LOC105631983 [Jatropha curcas]
4 Hb_000025_520 0.1825796082 - - PREDICTED: pentatricopeptide repeat-containing protein At5g27110 [Jatropha curcas]
5 Hb_096224_040 0.1841966497 - - PREDICTED: probable nucleoredoxin 3 isoform X1 [Jatropha curcas]
6 Hb_006573_200 0.1872112525 - - PREDICTED: pentatricopeptide repeat-containing protein At5g52850, chloroplastic [Jatropha curcas]
7 Hb_004807_030 0.1892886187 - - PREDICTED: pentatricopeptide repeat-containing protein At3g12770-like [Jatropha curcas]
8 Hb_000976_150 0.1909624983 - - PREDICTED: serine/arginine-rich splicing factor SR45 [Jatropha curcas]
9 Hb_153258_010 0.1929339292 - - PREDICTED: uncharacterized protein LOC105642325 [Jatropha curcas]
10 Hb_001266_060 0.1929483436 - - PREDICTED: putative pentatricopeptide repeat-containing protein At3g47840 [Jatropha curcas]
11 Hb_004316_070 0.1929926133 - - E3 ubiquitin-protein ligase UPL5 -like protein [Gossypium arboreum]
12 Hb_031042_020 0.1934946372 - - PREDICTED: putative pentatricopeptide repeat-containing protein At5g47460 [Jatropha curcas]
13 Hb_000532_020 0.1938785441 - - beta-tubulin [Bouteloua eriopoda]
14 Hb_000031_050 0.1942103998 - - PREDICTED: uncharacterized protein LOC105637478 [Jatropha curcas]
15 Hb_002813_050 0.1972616774 desease resistance Gene Name: TIR_2 PREDICTED: uncharacterized protein LOC105635699 [Jatropha curcas]
16 Hb_000200_140 0.1986322907 - - PREDICTED: uncharacterized protein LOC104591989 [Nelumbo nucifera]
17 Hb_000592_050 0.1991958438 - - PREDICTED: golgin candidate 2 [Jatropha curcas]
18 Hb_000086_590 0.1999685593 - - PREDICTED: putative uncharacterized protein At4g01020, chloroplastic [Jatropha curcas]
19 Hb_106321_030 0.2001234925 - - PREDICTED: mitogen-activated protein kinase kinase kinase 1 [Jatropha curcas]
20 Hb_000619_080 0.2003505746 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 21 [Jatropha curcas]

Gene co-expression network

sample Hb_002450_190 Hb_002450_190 Hb_005396_070 Hb_005396_070 Hb_002450_190--Hb_005396_070 Hb_001141_390 Hb_001141_390 Hb_002450_190--Hb_001141_390 Hb_000025_520 Hb_000025_520 Hb_002450_190--Hb_000025_520 Hb_096224_040 Hb_096224_040 Hb_002450_190--Hb_096224_040 Hb_006573_200 Hb_006573_200 Hb_002450_190--Hb_006573_200 Hb_004807_030 Hb_004807_030 Hb_002450_190--Hb_004807_030 Hb_000619_080 Hb_000619_080 Hb_005396_070--Hb_000619_080 Hb_000953_010 Hb_000953_010 Hb_005396_070--Hb_000953_010 Hb_000358_080 Hb_000358_080 Hb_005396_070--Hb_000358_080 Hb_175338_030 Hb_175338_030 Hb_005396_070--Hb_175338_030 Hb_002307_100 Hb_002307_100 Hb_005396_070--Hb_002307_100 Hb_000204_210 Hb_000204_210 Hb_001141_390--Hb_000204_210 Hb_000680_050 Hb_000680_050 Hb_001141_390--Hb_000680_050 Hb_002374_310 Hb_002374_310 Hb_001141_390--Hb_002374_310 Hb_048219_010 Hb_048219_010 Hb_001141_390--Hb_048219_010 Hb_005015_070 Hb_005015_070 Hb_001141_390--Hb_005015_070 Hb_001584_150 Hb_001584_150 Hb_001141_390--Hb_001584_150 Hb_031042_020 Hb_031042_020 Hb_000025_520--Hb_031042_020 Hb_000025_520--Hb_001141_390 Hb_000025_520--Hb_000204_210 Hb_000025_520--Hb_000680_050 Hb_000025_520--Hb_004807_030 Hb_168697_010 Hb_168697_010 Hb_000025_520--Hb_168697_010 Hb_005843_100 Hb_005843_100 Hb_096224_040--Hb_005843_100 Hb_027506_020 Hb_027506_020 Hb_096224_040--Hb_027506_020 Hb_005843_150 Hb_005843_150 Hb_096224_040--Hb_005843_150 Hb_096224_040--Hb_001141_390 Hb_002813_050 Hb_002813_050 Hb_096224_040--Hb_002813_050 Hb_000665_010 Hb_000665_010 Hb_096224_040--Hb_000665_010 Hb_000031_050 Hb_000031_050 Hb_006573_200--Hb_000031_050 Hb_000077_230 Hb_000077_230 Hb_006573_200--Hb_000077_230 Hb_006573_200--Hb_000953_010 Hb_124315_020 Hb_124315_020 Hb_006573_200--Hb_124315_020 Hb_000077_070 Hb_000077_070 Hb_006573_200--Hb_000077_070 Hb_001728_100 Hb_001728_100 Hb_006573_200--Hb_001728_100 Hb_000019_130 Hb_000019_130 Hb_004807_030--Hb_000019_130 Hb_000457_150 Hb_000457_150 Hb_004807_030--Hb_000457_150 Hb_000935_050 Hb_000935_050 Hb_004807_030--Hb_000935_050 Hb_000307_030 Hb_000307_030 Hb_004807_030--Hb_000307_030 Hb_000427_050 Hb_000427_050 Hb_004807_030--Hb_000427_050 Hb_004807_030--Hb_031042_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.74746 9.23023 1.9406 1.76026 10.415 6.84346
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.58883 2.65754 17.6053 1.20772 1.31044

CAGE analysis