Hb_000025_520

Information

Type -
Description -
Location Contig25: 509660-511693
Sequence    

Annotation

kegg
ID cit:102612538
description pentatricopeptide repeat-containing protein At5g27110-like
nr
ID XP_012074491.1
description PREDICTED: pentatricopeptide repeat-containing protein At5g27110 [Jatropha curcas]
swissprot
ID O04659
description Pentatricopeptide repeat-containing protein At5g27110 OS=Arabidopsis thaliana GN=PCMP-E14 PE=2 SV=2
trembl
ID A0A067KVW5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08394 PE=4 SV=1
Gene Ontology
ID GO:0005515
description pentatricopeptide repeat-containing protein at5g27110

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000025_520 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At5g27110 [Jatropha curcas]
2 Hb_031042_020 0.1008716492 - - PREDICTED: putative pentatricopeptide repeat-containing protein At5g47460 [Jatropha curcas]
3 Hb_001141_390 0.1052242429 - - PREDICTED: uncharacterized protein LOC105631983 [Jatropha curcas]
4 Hb_000204_210 0.1134269181 - - PREDICTED: uncharacterized protein LOC105639237 [Jatropha curcas]
5 Hb_000680_050 0.1153301363 - - hypothetical protein JCGZ_24767 [Jatropha curcas]
6 Hb_004807_030 0.1166374428 - - PREDICTED: pentatricopeptide repeat-containing protein At3g12770-like [Jatropha curcas]
7 Hb_168697_010 0.1232342422 - - hypothetical protein JCGZ_16772 [Jatropha curcas]
8 Hb_011716_030 0.1251794645 - - PREDICTED: putative pentatricopeptide repeat-containing protein At3g23330 [Populus euphratica]
9 Hb_012395_220 0.1292801272 - - PREDICTED: pentatricopeptide repeat-containing protein At4g02750-like [Jatropha curcas]
10 Hb_001266_060 0.1319591407 - - PREDICTED: putative pentatricopeptide repeat-containing protein At3g47840 [Jatropha curcas]
11 Hb_002986_130 0.1333709073 - - PREDICTED: pentatricopeptide repeat-containing protein DOT4, chloroplastic-like [Jatropha curcas]
12 Hb_003020_050 0.1339397916 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
13 Hb_002496_040 0.1354883431 - - PREDICTED: pentatricopeptide repeat-containing protein At2g03380, mitochondrial [Jatropha curcas]
14 Hb_001584_150 0.1357059094 - - PREDICTED: putative pentatricopeptide repeat-containing protein At5g40405 [Jatropha curcas]
15 Hb_000107_420 0.1382858498 - - PREDICTED: pentatricopeptide repeat-containing protein At2g03880, mitochondrial [Jatropha curcas]
16 Hb_005914_150 0.1426441131 - - PREDICTED: pentatricopeptide repeat-containing protein At4g19890 [Jatropha curcas]
17 Hb_000427_050 0.1448682812 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
18 Hb_002813_050 0.1449436903 desease resistance Gene Name: TIR_2 PREDICTED: uncharacterized protein LOC105635699 [Jatropha curcas]
19 Hb_001584_160 0.1476425764 - - PREDICTED: putative pentatricopeptide repeat-containing protein At1g56570 [Jatropha curcas]
20 Hb_000140_230 0.1476453829 - - PREDICTED: pentatricopeptide repeat-containing protein At3g61520, mitochondrial-like [Jatropha curcas]

Gene co-expression network

sample Hb_000025_520 Hb_000025_520 Hb_031042_020 Hb_031042_020 Hb_000025_520--Hb_031042_020 Hb_001141_390 Hb_001141_390 Hb_000025_520--Hb_001141_390 Hb_000204_210 Hb_000204_210 Hb_000025_520--Hb_000204_210 Hb_000680_050 Hb_000680_050 Hb_000025_520--Hb_000680_050 Hb_004807_030 Hb_004807_030 Hb_000025_520--Hb_004807_030 Hb_168697_010 Hb_168697_010 Hb_000025_520--Hb_168697_010 Hb_002986_130 Hb_002986_130 Hb_031042_020--Hb_002986_130 Hb_001584_160 Hb_001584_160 Hb_031042_020--Hb_001584_160 Hb_001266_060 Hb_001266_060 Hb_031042_020--Hb_001266_060 Hb_001956_200 Hb_001956_200 Hb_031042_020--Hb_001956_200 Hb_001584_150 Hb_001584_150 Hb_031042_020--Hb_001584_150 Hb_000574_410 Hb_000574_410 Hb_031042_020--Hb_000574_410 Hb_001141_390--Hb_000204_210 Hb_001141_390--Hb_000680_050 Hb_002374_310 Hb_002374_310 Hb_001141_390--Hb_002374_310 Hb_048219_010 Hb_048219_010 Hb_001141_390--Hb_048219_010 Hb_005015_070 Hb_005015_070 Hb_001141_390--Hb_005015_070 Hb_001141_390--Hb_001584_150 Hb_000204_210--Hb_001584_150 Hb_008500_010 Hb_008500_010 Hb_000204_210--Hb_008500_010 Hb_002678_020 Hb_002678_020 Hb_000204_210--Hb_002678_020 Hb_001507_020 Hb_001507_020 Hb_000204_210--Hb_001507_020 Hb_009486_200 Hb_009486_200 Hb_000204_210--Hb_009486_200 Hb_000680_050--Hb_168697_010 Hb_000680_050--Hb_048219_010 Hb_012395_220 Hb_012395_220 Hb_000680_050--Hb_012395_220 Hb_002813_050 Hb_002813_050 Hb_000680_050--Hb_002813_050 Hb_000680_050--Hb_005015_070 Hb_000019_130 Hb_000019_130 Hb_004807_030--Hb_000019_130 Hb_000457_150 Hb_000457_150 Hb_004807_030--Hb_000457_150 Hb_000935_050 Hb_000935_050 Hb_004807_030--Hb_000935_050 Hb_000307_030 Hb_000307_030 Hb_004807_030--Hb_000307_030 Hb_000427_050 Hb_000427_050 Hb_004807_030--Hb_000427_050 Hb_004807_030--Hb_031042_020 Hb_000140_230 Hb_000140_230 Hb_168697_010--Hb_000140_230 Hb_010874_020 Hb_010874_020 Hb_168697_010--Hb_010874_020 Hb_168697_010--Hb_048219_010 Hb_003020_050 Hb_003020_050 Hb_168697_010--Hb_003020_050 Hb_168697_010--Hb_009486_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.359095 0.669726 0.0449527 0.128648 0.321065 0.488157
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.155054 0.31372 0.925834 0.214919 0.184258

CAGE analysis