Hb_004807_030

Information

Type -
Description -
Location Contig4807: 31644-33083
Sequence    

Annotation

kegg
ID vvi:100253764
description pentatricopeptide repeat-containing protein At2g13600-like
nr
ID XP_012084465.1
description PREDICTED: pentatricopeptide repeat-containing protein At3g12770-like [Jatropha curcas]
swissprot
ID Q9LW63
description Putative pentatricopeptide repeat-containing protein At3g23330 OS=Arabidopsis thaliana GN=PCMP-H32 PE=3 SV=1
trembl
ID A0A067JUH8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19626 PE=4 SV=1
Gene Ontology
ID GO:0016787
description pentatricopeptide repeat-containing protein at3g12770-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004807_030 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At3g12770-like [Jatropha curcas]
2 Hb_000019_130 0.0964625659 - - PREDICTED: putative pentatricopeptide repeat-containing protein At2g01510 [Jatropha curcas]
3 Hb_000457_150 0.1049386281 - - PREDICTED: transcription factor GTE8-like [Jatropha curcas]
4 Hb_000935_050 0.1080063442 - - PREDICTED: pentatricopeptide repeat-containing protein At3g49710 [Jatropha curcas]
5 Hb_000307_030 0.1146624731 - - PREDICTED: pentatricopeptide repeat-containing protein At5g40410, mitochondrial [Jatropha curcas]
6 Hb_000427_050 0.114999159 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
7 Hb_031042_020 0.1157775215 - - PREDICTED: putative pentatricopeptide repeat-containing protein At5g47460 [Jatropha curcas]
8 Hb_000025_520 0.1166374428 - - PREDICTED: pentatricopeptide repeat-containing protein At5g27110 [Jatropha curcas]
9 Hb_000007_150 0.1172827618 - - PREDICTED: pentatricopeptide repeat-containing protein At2g41080 [Jatropha curcas]
10 Hb_000297_200 0.1176356064 - - PREDICTED: pentatricopeptide repeat-containing protein At2g33760-like [Vitis vinifera]
11 Hb_005147_090 0.117911956 - - PREDICTED: KH domain-containing protein At1g09660/At1g09670 isoform X1 [Jatropha curcas]
12 Hb_010710_040 0.1183423253 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
13 Hb_001141_390 0.1185478393 - - PREDICTED: uncharacterized protein LOC105631983 [Jatropha curcas]
14 Hb_000574_350 0.1207498182 - - PREDICTED: pentatricopeptide repeat-containing protein At4g02750-like [Jatropha curcas]
15 Hb_001584_160 0.1209951437 - - PREDICTED: putative pentatricopeptide repeat-containing protein At1g56570 [Jatropha curcas]
16 Hb_004128_060 0.1217773711 - - PREDICTED: DNA topoisomerase 6 subunit A [Jatropha curcas]
17 Hb_002813_050 0.1231668988 desease resistance Gene Name: TIR_2 PREDICTED: uncharacterized protein LOC105635699 [Jatropha curcas]
18 Hb_007747_200 0.1233118921 - - PREDICTED: putative pentatricopeptide repeat-containing protein At5g37570 [Jatropha curcas]
19 Hb_027472_170 0.1233248162 - - hypothetical protein POPTR_0007s08080g [Populus trichocarpa]
20 Hb_005843_100 0.1234349904 - - PREDICTED: pentatricopeptide repeat-containing protein At5g39350-like [Jatropha curcas]

Gene co-expression network

sample Hb_004807_030 Hb_004807_030 Hb_000019_130 Hb_000019_130 Hb_004807_030--Hb_000019_130 Hb_000457_150 Hb_000457_150 Hb_004807_030--Hb_000457_150 Hb_000935_050 Hb_000935_050 Hb_004807_030--Hb_000935_050 Hb_000307_030 Hb_000307_030 Hb_004807_030--Hb_000307_030 Hb_000427_050 Hb_000427_050 Hb_004807_030--Hb_000427_050 Hb_031042_020 Hb_031042_020 Hb_004807_030--Hb_031042_020 Hb_027472_170 Hb_027472_170 Hb_000019_130--Hb_027472_170 Hb_007747_200 Hb_007747_200 Hb_000019_130--Hb_007747_200 Hb_000019_130--Hb_000935_050 Hb_000997_400 Hb_000997_400 Hb_000019_130--Hb_000997_400 Hb_000007_150 Hb_000007_150 Hb_000019_130--Hb_000007_150 Hb_007075_050 Hb_007075_050 Hb_000019_130--Hb_007075_050 Hb_005532_060 Hb_005532_060 Hb_000457_150--Hb_005532_060 Hb_178968_110 Hb_178968_110 Hb_000457_150--Hb_178968_110 Hb_000297_200 Hb_000297_200 Hb_000457_150--Hb_000297_200 Hb_055062_030 Hb_055062_030 Hb_000457_150--Hb_055062_030 Hb_000457_150--Hb_000997_400 Hb_000567_260 Hb_000567_260 Hb_000457_150--Hb_000567_260 Hb_119600_040 Hb_119600_040 Hb_000935_050--Hb_119600_040 Hb_000935_050--Hb_007075_050 Hb_000935_050--Hb_027472_170 Hb_000935_050--Hb_000297_200 Hb_000935_050--Hb_007747_200 Hb_000307_030--Hb_027472_170 Hb_016901_010 Hb_016901_010 Hb_000307_030--Hb_016901_010 Hb_000307_030--Hb_000007_150 Hb_000307_030--Hb_000297_200 Hb_000307_030--Hb_000935_050 Hb_002218_010 Hb_002218_010 Hb_000307_030--Hb_002218_010 Hb_001159_100 Hb_001159_100 Hb_000427_050--Hb_001159_100 Hb_002678_020 Hb_002678_020 Hb_000427_050--Hb_002678_020 Hb_029584_130 Hb_029584_130 Hb_000427_050--Hb_029584_130 Hb_000427_050--Hb_000007_150 Hb_001266_060 Hb_001266_060 Hb_000427_050--Hb_001266_060 Hb_004452_010 Hb_004452_010 Hb_000427_050--Hb_004452_010 Hb_002986_130 Hb_002986_130 Hb_031042_020--Hb_002986_130 Hb_001584_160 Hb_001584_160 Hb_031042_020--Hb_001584_160 Hb_031042_020--Hb_001266_060 Hb_001956_200 Hb_001956_200 Hb_031042_020--Hb_001956_200 Hb_001584_150 Hb_001584_150 Hb_031042_020--Hb_001584_150 Hb_000574_410 Hb_000574_410 Hb_031042_020--Hb_000574_410
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.59086 2.75863 0.296429 0.474768 1.71144 2.63416
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.63683 2.4724 4.44444 0.740588 0.699201

CAGE analysis