Hb_005396_070

Information

Type -
Description -
Location Contig5396: 65932-73189
Sequence    

Annotation

kegg
ID mtr:MTR_1g094010
description Phosphoenolpyruvate carboxylase
nr
ID KCW86390.1
description hypothetical protein EUGRSUZ_B03067 [Eucalyptus grandis]
swissprot
ID -
description -
trembl
ID A0A059D7K5
description Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_B03067 PE=4 SV=1
Gene Ontology
ID GO:0008964
description phosphoenolpyruvate carboxylase 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005396_070 0.0 - - hypothetical protein EUGRSUZ_B03067 [Eucalyptus grandis]
2 Hb_000619_080 0.1125263055 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 21 [Jatropha curcas]
3 Hb_000953_010 0.1267750112 - - hypothetical protein CISIN_1g0425012mg, partial [Citrus sinensis]
4 Hb_000358_080 0.1281475389 - - Ribonuclease 3 [Gossypium arboreum]
5 Hb_175338_030 0.129008979 - - PREDICTED: uncharacterized protein LOC105648015 [Jatropha curcas]
6 Hb_002450_190 0.1290092258 - - Nonspecific lipid-transfer protein precursor, putative [Ricinus communis]
7 Hb_002307_100 0.1297190764 - - PREDICTED: protein transport protein sec23-1 [Jatropha curcas]
8 Hb_000062_250 0.1325089769 - - PREDICTED: F-box protein SKIP14 [Jatropha curcas]
9 Hb_000976_150 0.1328645743 - - PREDICTED: serine/arginine-rich splicing factor SR45 [Jatropha curcas]
10 Hb_000230_080 0.1329360783 - - PREDICTED: serine/threonine-protein kinase EDR1 [Jatropha curcas]
11 Hb_007757_110 0.132977188 - - PREDICTED: E3 ubiquitin-protein ligase UPL5 [Jatropha curcas]
12 Hb_006573_200 0.1335388648 - - PREDICTED: pentatricopeptide repeat-containing protein At5g52850, chloroplastic [Jatropha curcas]
13 Hb_010710_010 0.1336761387 - - pumilio/Puf RNA-binding domain-containing family protein [Populus trichocarpa]
14 Hb_000413_180 0.1361057568 transcription factor TF Family: GeBP PREDICTED: mediator-associated protein 1-like [Jatropha curcas]
15 Hb_000031_050 0.137992613 - - PREDICTED: uncharacterized protein LOC105637478 [Jatropha curcas]
16 Hb_000427_050 0.1380372377 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
17 Hb_156850_030 0.1390368085 - - PREDICTED: probable serine/threonine-protein kinase At4g35230 [Jatropha curcas]
18 Hb_000086_590 0.1390691092 - - PREDICTED: putative uncharacterized protein At4g01020, chloroplastic [Jatropha curcas]
19 Hb_003750_080 0.1393096899 - - PREDICTED: DNA repair protein complementing XP-C cells homolog [Jatropha curcas]
20 Hb_000173_400 0.1413537767 - - PREDICTED: pentatricopeptide repeat-containing protein At5g18950 [Jatropha curcas]

Gene co-expression network

sample Hb_005396_070 Hb_005396_070 Hb_000619_080 Hb_000619_080 Hb_005396_070--Hb_000619_080 Hb_000953_010 Hb_000953_010 Hb_005396_070--Hb_000953_010 Hb_000358_080 Hb_000358_080 Hb_005396_070--Hb_000358_080 Hb_175338_030 Hb_175338_030 Hb_005396_070--Hb_175338_030 Hb_002450_190 Hb_002450_190 Hb_005396_070--Hb_002450_190 Hb_002307_100 Hb_002307_100 Hb_005396_070--Hb_002307_100 Hb_000619_080--Hb_175338_030 Hb_000619_080--Hb_002307_100 Hb_007757_110 Hb_007757_110 Hb_000619_080--Hb_007757_110 Hb_010175_020 Hb_010175_020 Hb_000619_080--Hb_010175_020 Hb_002477_160 Hb_002477_160 Hb_000619_080--Hb_002477_160 Hb_001975_160 Hb_001975_160 Hb_000619_080--Hb_001975_160 Hb_000803_190 Hb_000803_190 Hb_000953_010--Hb_000803_190 Hb_004734_060 Hb_004734_060 Hb_000953_010--Hb_004734_060 Hb_000836_360 Hb_000836_360 Hb_000953_010--Hb_000836_360 Hb_000173_400 Hb_000173_400 Hb_000953_010--Hb_000173_400 Hb_033152_080 Hb_033152_080 Hb_000953_010--Hb_033152_080 Hb_156850_030 Hb_156850_030 Hb_000953_010--Hb_156850_030 Hb_000490_030 Hb_000490_030 Hb_000358_080--Hb_000490_030 Hb_007943_080 Hb_007943_080 Hb_000358_080--Hb_007943_080 Hb_001936_050 Hb_001936_050 Hb_000358_080--Hb_001936_050 Hb_000138_040 Hb_000138_040 Hb_000358_080--Hb_000138_040 Hb_006091_030 Hb_006091_030 Hb_000358_080--Hb_006091_030 Hb_010710_010 Hb_010710_010 Hb_000358_080--Hb_010710_010 Hb_175338_030--Hb_002307_100 Hb_175338_030--Hb_002477_160 Hb_175338_030--Hb_010175_020 Hb_175338_030--Hb_007757_110 Hb_004837_040 Hb_004837_040 Hb_175338_030--Hb_004837_040 Hb_001141_390 Hb_001141_390 Hb_002450_190--Hb_001141_390 Hb_000025_520 Hb_000025_520 Hb_002450_190--Hb_000025_520 Hb_096224_040 Hb_096224_040 Hb_002450_190--Hb_096224_040 Hb_006573_200 Hb_006573_200 Hb_002450_190--Hb_006573_200 Hb_004807_030 Hb_004807_030 Hb_002450_190--Hb_004807_030 Hb_002307_100--Hb_002477_160 Hb_002307_100--Hb_007757_110 Hb_002307_100--Hb_010175_020 Hb_000661_050 Hb_000661_050 Hb_002307_100--Hb_000661_050 Hb_007558_140 Hb_007558_140 Hb_002307_100--Hb_007558_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
15.5715 17.093 3.62788 3.50373 17.1922 18.6085
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.0946 4.68725 30.4831 5.67784 3.71114

CAGE analysis