Hb_027506_020

Information

Type -
Description -
Location Contig27506: 19433-20650
Sequence    

Annotation

kegg
ID vvi:100265306
description F-box/kelch-repeat protein At1g30090-like
nr
ID XP_012072116.1
description PREDICTED: F-box/kelch-repeat protein At1g30090 [Jatropha curcas]
swissprot
ID Q9C6Z0
description F-box/kelch-repeat protein At1g30090 OS=Arabidopsis thaliana GN=At1g30090 PE=2 SV=1
trembl
ID A0A067L1K0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04627 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28823: 19272-21757
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_027506_020 0.0 - - PREDICTED: F-box/kelch-repeat protein At1g30090 [Jatropha curcas]
2 Hb_001828_130 0.0960748497 - - PREDICTED: transcription factor GTE8-like [Jatropha curcas]
3 Hb_003752_100 0.0999985152 - - PREDICTED: FRIGIDA-like protein 3 [Jatropha curcas]
4 Hb_000140_070 0.1005758853 - - PREDICTED: uncharacterized protein LOC105642935 isoform X1 [Jatropha curcas]
5 Hb_076693_020 0.1011695473 - - hypothetical protein CISIN_1g0121812mg, partial [Citrus sinensis]
6 Hb_004785_060 0.1027081498 - - PREDICTED: SKP1-interacting partner 15 [Jatropha curcas]
7 Hb_012807_050 0.1029767222 desease resistance Gene Name: CDC48_N PREDICTED: cell division cycle protein 48 homolog [Jatropha curcas]
8 Hb_005551_060 0.1030251997 - - PREDICTED: uncharacterized protein LOC105635819 [Jatropha curcas]
9 Hb_005015_070 0.10318593 - - PREDICTED: pentatricopeptide repeat-containing protein At4g39530 [Jatropha curcas]
10 Hb_011491_010 0.1062082635 - - Protein YME1, putative [Ricinus communis]
11 Hb_002636_180 0.1078154659 - - inositol or phosphatidylinositol kinase, putative [Ricinus communis]
12 Hb_003106_040 0.1106662293 - - lipase, putative [Ricinus communis]
13 Hb_009838_050 0.1107098262 - - conserved hypothetical protein [Ricinus communis]
14 Hb_002188_110 0.1120440962 desease resistance Gene Name: NB-ARC phosphoprotein phosphatase, putative [Ricinus communis]
15 Hb_048219_010 0.1122019671 - - coronatine-insensitive 1 [Hevea brasiliensis]
16 Hb_001864_060 0.113585008 transcription factor TF Family: GeBP PREDICTED: mediator-associated protein 1-like [Jatropha curcas]
17 Hb_000441_070 0.1143648615 transcription factor TF Family: C3H PREDICTED: 30-kDa cleavage and polyadenylation specificity factor 30 isoform X1 [Jatropha curcas]
18 Hb_001247_120 0.1151098023 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 3 [Jatropha curcas]
19 Hb_002745_010 0.1151207333 - - PREDICTED: SUMO-conjugating enzyme SCE1 [Cucumis sativus]
20 Hb_096224_040 0.1155548883 - - PREDICTED: probable nucleoredoxin 3 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_027506_020 Hb_027506_020 Hb_001828_130 Hb_001828_130 Hb_027506_020--Hb_001828_130 Hb_003752_100 Hb_003752_100 Hb_027506_020--Hb_003752_100 Hb_000140_070 Hb_000140_070 Hb_027506_020--Hb_000140_070 Hb_076693_020 Hb_076693_020 Hb_027506_020--Hb_076693_020 Hb_004785_060 Hb_004785_060 Hb_027506_020--Hb_004785_060 Hb_012807_050 Hb_012807_050 Hb_027506_020--Hb_012807_050 Hb_011491_010 Hb_011491_010 Hb_001828_130--Hb_011491_010 Hb_002798_070 Hb_002798_070 Hb_001828_130--Hb_002798_070 Hb_000243_250 Hb_000243_250 Hb_001828_130--Hb_000243_250 Hb_000322_150 Hb_000322_150 Hb_001828_130--Hb_000322_150 Hb_002636_100 Hb_002636_100 Hb_001828_130--Hb_002636_100 Hb_012564_030 Hb_012564_030 Hb_001828_130--Hb_012564_030 Hb_003082_010 Hb_003082_010 Hb_003752_100--Hb_003082_010 Hb_004109_030 Hb_004109_030 Hb_003752_100--Hb_004109_030 Hb_001864_060 Hb_001864_060 Hb_003752_100--Hb_001864_060 Hb_003175_030 Hb_003175_030 Hb_003752_100--Hb_003175_030 Hb_003752_100--Hb_001828_130 Hb_012055_060 Hb_012055_060 Hb_003752_100--Hb_012055_060 Hb_001059_100 Hb_001059_100 Hb_000140_070--Hb_001059_100 Hb_003373_040 Hb_003373_040 Hb_000140_070--Hb_003373_040 Hb_000140_070--Hb_076693_020 Hb_001220_030 Hb_001220_030 Hb_000140_070--Hb_001220_030 Hb_093084_070 Hb_093084_070 Hb_000140_070--Hb_093084_070 Hb_006847_040 Hb_006847_040 Hb_000140_070--Hb_006847_040 Hb_076693_020--Hb_000322_150 Hb_045793_010 Hb_045793_010 Hb_076693_020--Hb_045793_010 Hb_000441_070 Hb_000441_070 Hb_076693_020--Hb_000441_070 Hb_023827_040 Hb_023827_040 Hb_076693_020--Hb_023827_040 Hb_000025_360 Hb_000025_360 Hb_076693_020--Hb_000025_360 Hb_076693_020--Hb_006847_040 Hb_000859_060 Hb_000859_060 Hb_004785_060--Hb_000859_060 Hb_000000_370 Hb_000000_370 Hb_004785_060--Hb_000000_370 Hb_004785_060--Hb_012807_050 Hb_001021_170 Hb_001021_170 Hb_004785_060--Hb_001021_170 Hb_004355_020 Hb_004355_020 Hb_004785_060--Hb_004355_020 Hb_000181_070 Hb_000181_070 Hb_004785_060--Hb_000181_070 Hb_000229_020 Hb_000229_020 Hb_012807_050--Hb_000229_020 Hb_010172_090 Hb_010172_090 Hb_012807_050--Hb_010172_090 Hb_012807_050--Hb_076693_020 Hb_012807_050--Hb_000000_370 Hb_004767_050 Hb_004767_050 Hb_012807_050--Hb_004767_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
56.877 156.748 25.4406 39.4759 91.2277 78.2477
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
65.6015 72.1074 87.3147 42.6006 29.481

CAGE analysis