Hb_004137_060

Information

Type -
Description -
Location Contig4137: 32654-35728
Sequence    

Annotation

kegg
ID pop:POPTR_0005s21020g
description POPTRDRAFT_761009; pentatricopeptide repeat-containing family protein
nr
ID XP_012066079.1
description PREDICTED: pentatricopeptide repeat-containing protein At3g09040, mitochondrial [Jatropha curcas]
swissprot
ID Q9SS83
description Pentatricopeptide repeat-containing protein At3g09040, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E88 PE=2 SV=1
trembl
ID A0A067LFY3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25230 PE=4 SV=1
Gene Ontology
ID GO:0005515
description pentatricopeptide repeat-containing protein mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40973: 33567-33863 , PASA_asmbl_40974: 34928-35042
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004137_060 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At3g09040, mitochondrial [Jatropha curcas]
2 Hb_010417_050 0.0966076813 - - PREDICTED: uncharacterized protein LOC105645746 [Jatropha curcas]
3 Hb_000009_210 0.0983099764 - - PREDICTED: pentatricopeptide repeat-containing protein At2g01390 [Jatropha curcas]
4 Hb_014267_010 0.1045056074 - - PREDICTED: dnaJ homolog subfamily C GRV2 isoform X1 [Jatropha curcas]
5 Hb_000390_070 0.1059548826 - - PREDICTED: uncharacterized protein LOC105632478 isoform X1 [Jatropha curcas]
6 Hb_000574_070 0.1086177836 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 35 [Jatropha curcas]
7 Hb_000244_160 0.1093222899 - - PREDICTED: pentatricopeptide repeat-containing protein At3g24000, mitochondrial-like [Jatropha curcas]
8 Hb_010578_060 0.1107124244 - - PREDICTED: mediator of RNA polymerase II transcription subunit 14 [Jatropha curcas]
9 Hb_003467_020 0.1126804358 - - PREDICTED: type I inositol 1,4,5-trisphosphate 5-phosphatase 13-like [Jatropha curcas]
10 Hb_000313_060 0.1127142586 - - hypothetical protein [Beta vulgaris subsp. vulgaris]
11 Hb_000832_130 0.112920111 - - PREDICTED: pentatricopeptide repeat-containing protein At2g39620 [Jatropha curcas]
12 Hb_000335_020 0.1133642813 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
13 Hb_002986_130 0.1140519548 - - PREDICTED: pentatricopeptide repeat-containing protein DOT4, chloroplastic-like [Jatropha curcas]
14 Hb_005914_150 0.1145760071 - - PREDICTED: pentatricopeptide repeat-containing protein At4g19890 [Jatropha curcas]
15 Hb_006637_050 0.1152990895 - - PREDICTED: ethylene-insensitive protein 2 [Jatropha curcas]
16 Hb_008500_010 0.1164399365 - - PREDICTED: pentatricopeptide repeat-containing protein At2g17210 [Jatropha curcas]
17 Hb_003988_010 0.1172641357 - - PREDICTED: vacuolar-sorting receptor 3 [Jatropha curcas]
18 Hb_000878_010 0.1181146526 - - PREDICTED: putative pentatricopeptide repeat-containing protein At5g06400, mitochondrial [Jatropha curcas]
19 Hb_002636_050 0.1196925068 - - PREDICTED: putative pentatricopeptide repeat-containing protein At1g68930 [Jatropha curcas]
20 Hb_001584_150 0.1206193225 - - PREDICTED: putative pentatricopeptide repeat-containing protein At5g40405 [Jatropha curcas]

Gene co-expression network

sample Hb_004137_060 Hb_004137_060 Hb_010417_050 Hb_010417_050 Hb_004137_060--Hb_010417_050 Hb_000009_210 Hb_000009_210 Hb_004137_060--Hb_000009_210 Hb_014267_010 Hb_014267_010 Hb_004137_060--Hb_014267_010 Hb_000390_070 Hb_000390_070 Hb_004137_060--Hb_000390_070 Hb_000574_070 Hb_000574_070 Hb_004137_060--Hb_000574_070 Hb_000244_160 Hb_000244_160 Hb_004137_060--Hb_000244_160 Hb_003988_010 Hb_003988_010 Hb_010417_050--Hb_003988_010 Hb_010417_050--Hb_014267_010 Hb_004228_010 Hb_004228_010 Hb_010417_050--Hb_004228_010 Hb_001199_100 Hb_001199_100 Hb_010417_050--Hb_001199_100 Hb_000101_240 Hb_000101_240 Hb_010417_050--Hb_000101_240 Hb_001700_040 Hb_001700_040 Hb_010417_050--Hb_001700_040 Hb_000009_210--Hb_000390_070 Hb_033834_010 Hb_033834_010 Hb_000009_210--Hb_033834_010 Hb_000627_080 Hb_000627_080 Hb_000009_210--Hb_000627_080 Hb_000832_130 Hb_000832_130 Hb_000009_210--Hb_000832_130 Hb_126643_010 Hb_126643_010 Hb_000009_210--Hb_126643_010 Hb_012656_030 Hb_012656_030 Hb_014267_010--Hb_012656_030 Hb_000318_390 Hb_000318_390 Hb_014267_010--Hb_000318_390 Hb_001967_030 Hb_001967_030 Hb_014267_010--Hb_001967_030 Hb_000796_030 Hb_000796_030 Hb_014267_010--Hb_000796_030 Hb_014267_010--Hb_004228_010 Hb_000390_070--Hb_000627_080 Hb_007757_110 Hb_007757_110 Hb_000390_070--Hb_007757_110 Hb_001930_010 Hb_001930_010 Hb_000390_070--Hb_001930_010 Hb_007586_030 Hb_007586_030 Hb_000390_070--Hb_007586_030 Hb_000244_250 Hb_000244_250 Hb_000390_070--Hb_000244_250 Hb_004055_040 Hb_004055_040 Hb_000390_070--Hb_004055_040 Hb_001472_090 Hb_001472_090 Hb_000574_070--Hb_001472_090 Hb_003488_030 Hb_003488_030 Hb_000574_070--Hb_003488_030 Hb_000574_070--Hb_001700_040 Hb_000544_050 Hb_000544_050 Hb_000574_070--Hb_000544_050 Hb_001913_060 Hb_001913_060 Hb_000574_070--Hb_001913_060 Hb_000574_070--Hb_010417_050 Hb_027450_010 Hb_027450_010 Hb_000244_160--Hb_027450_010 Hb_034271_030 Hb_034271_030 Hb_000244_160--Hb_034271_030 Hb_000723_260 Hb_000723_260 Hb_000244_160--Hb_000723_260 Hb_000244_160--Hb_010417_050 Hb_000577_010 Hb_000577_010 Hb_000244_160--Hb_000577_010 Hb_000707_050 Hb_000707_050 Hb_000244_160--Hb_000707_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.724519 1.16335 0.246535 0.446534 1.35967 1.91129
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.325181 0.567418 1.53298 0.82508 0.664958

CAGE analysis