Hb_099864_010

Information

Type -
Description -
Location Contig99864: 1456-3063
Sequence    

Annotation

kegg
ID rcu:RCOM_0662960
description Disease resistance protein RPM1, putative (EC:3.1.3.16)
nr
ID XP_002530179.1
description Disease resistance protein RPM1, putative [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SW10
description Disease resistance protein RPM1, putative OS=Ricinus communis GN=RCOM_0662960 PE=4 SV=1
Gene Ontology
ID GO:0097159
description disease resistance protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_099864_010 0.0 - - Disease resistance protein RPM1, putative [Ricinus communis]
2 Hb_182424_010 0.1395756486 - - PREDICTED: U-box domain-containing protein 51 [Jatropha curcas]
3 Hb_038011_010 0.1951176284 - - hypothetical protein POPTR_0031s004401g, partial [Populus trichocarpa]
4 Hb_000431_020 0.2045634003 - - hypothetical protein JCGZ_06801 [Jatropha curcas]
5 Hb_011218_060 0.2116914032 - - PREDICTED: dephospho-CoA kinase-like [Jatropha curcas]
6 Hb_127003_010 0.2119252434 - - PREDICTED: uncharacterized protein LOC105633613 [Jatropha curcas]
7 Hb_011287_090 0.2140724427 - - PREDICTED: GDP-mannose transporter GONST3-like [Populus euphratica]
8 Hb_067188_010 0.2233097955 - - -
9 Hb_000187_090 0.2312880245 - - PREDICTED: magnesium transporter MRS2-3 [Jatropha curcas]
10 Hb_002508_020 0.2320302452 - - PREDICTED: SNF1-related protein kinase regulatory subunit beta-1 [Jatropha curcas]
11 Hb_000532_020 0.2321040399 - - beta-tubulin [Bouteloua eriopoda]
12 Hb_000291_280 0.2321965145 - - PREDICTED: LOW QUALITY PROTEIN: myosin-11 [Jatropha curcas]
13 Hb_000041_150 0.2326880424 - - Stachyose synthase precursor, putative [Ricinus communis]
14 Hb_000832_200 0.234216201 - - 2-oxoglutarate dehydrogenase, putative [Ricinus communis]
15 Hb_000038_030 0.2372914542 - - PREDICTED: probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 7-like [Glycine max]
16 Hb_022148_010 0.238118009 - - PREDICTED: uncharacterized protein LOC105638910 [Jatropha curcas]
17 Hb_085863_020 0.2392183462 transcription factor TF Family: MYB-related PREDICTED: telomere repeat-binding factor 1 [Jatropha curcas]
18 Hb_181810_020 0.2423979655 - - -
19 Hb_002450_190 0.2448581441 - - Nonspecific lipid-transfer protein precursor, putative [Ricinus communis]
20 Hb_000049_070 0.2449825558 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA11 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_099864_010 Hb_099864_010 Hb_182424_010 Hb_182424_010 Hb_099864_010--Hb_182424_010 Hb_038011_010 Hb_038011_010 Hb_099864_010--Hb_038011_010 Hb_000431_020 Hb_000431_020 Hb_099864_010--Hb_000431_020 Hb_011218_060 Hb_011218_060 Hb_099864_010--Hb_011218_060 Hb_127003_010 Hb_127003_010 Hb_099864_010--Hb_127003_010 Hb_011287_090 Hb_011287_090 Hb_099864_010--Hb_011287_090 Hb_182424_010--Hb_127003_010 Hb_182424_010--Hb_011287_090 Hb_182424_010--Hb_011218_060 Hb_170193_010 Hb_170193_010 Hb_182424_010--Hb_170193_010 Hb_000041_150 Hb_000041_150 Hb_182424_010--Hb_000041_150 Hb_090497_010 Hb_090497_010 Hb_038011_010--Hb_090497_010 Hb_073452_010 Hb_073452_010 Hb_038011_010--Hb_073452_010 Hb_048116_010 Hb_048116_010 Hb_038011_010--Hb_048116_010 Hb_038011_010--Hb_011287_090 Hb_002326_050 Hb_002326_050 Hb_038011_010--Hb_002326_050 Hb_000176_170 Hb_000176_170 Hb_000431_020--Hb_000176_170 Hb_003768_040 Hb_003768_040 Hb_000431_020--Hb_003768_040 Hb_000832_200 Hb_000832_200 Hb_000431_020--Hb_000832_200 Hb_000038_030 Hb_000038_030 Hb_000431_020--Hb_000038_030 Hb_000406_040 Hb_000406_040 Hb_000431_020--Hb_000406_040 Hb_002391_230 Hb_002391_230 Hb_011218_060--Hb_002391_230 Hb_000291_280 Hb_000291_280 Hb_011218_060--Hb_000291_280 Hb_005227_070 Hb_005227_070 Hb_011218_060--Hb_005227_070 Hb_000622_310 Hb_000622_310 Hb_011218_060--Hb_000622_310 Hb_011909_040 Hb_011909_040 Hb_011218_060--Hb_011909_040 Hb_127003_010--Hb_000041_150 Hb_127003_010--Hb_170193_010 Hb_153258_010 Hb_153258_010 Hb_127003_010--Hb_153258_010 Hb_000139_380 Hb_000139_380 Hb_127003_010--Hb_000139_380 Hb_098993_010 Hb_098993_010 Hb_127003_010--Hb_098993_010 Hb_000049_070 Hb_000049_070 Hb_011287_090--Hb_000049_070 Hb_002874_070 Hb_002874_070 Hb_011287_090--Hb_002874_070 Hb_000077_130 Hb_000077_130 Hb_011287_090--Hb_000077_130 Hb_011287_090--Hb_000139_380 Hb_000236_250 Hb_000236_250 Hb_011287_090--Hb_000236_250 Hb_006935_050 Hb_006935_050 Hb_011287_090--Hb_006935_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.580909 0.333588 0.597242 0.299634 1.51303 1.43461
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.142538 0.280177 2.42329 0.363428 0

CAGE analysis