Hb_000832_200

Information

Type -
Description -
Location Contig832: 118259-124631
Sequence    

Annotation

kegg
ID rcu:RCOM_0465620
description 2-oxoglutarate dehydrogenase, putative (EC:1.2.4.2)
nr
ID XP_002528465.1
description 2-oxoglutarate dehydrogenase, putative [Ricinus communis]
swissprot
ID Q54JE4
description 2-oxoglutarate dehydrogenase, mitochondrial OS=Dictyostelium discoideum GN=ogdh PE=3 SV=1
trembl
ID B9SR46
description 2-oxoglutarate dehydrogenase, putative OS=Ricinus communis GN=RCOM_0465620 PE=4 SV=1
Gene Ontology
ID GO:0004591
description 2-oxoglutarate mitochondrial-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59841: 118279-119111 , PASA_asmbl_59843: 120848-121179 , PASA_asmbl_59844: 121363-124536
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000832_200 0.0 - - 2-oxoglutarate dehydrogenase, putative [Ricinus communis]
2 Hb_000406_040 0.1466174574 - - PREDICTED: LOW QUALITY PROTEIN: FRIGIDA-like protein 5 [Jatropha curcas]
3 Hb_007441_070 0.1524175577 - - hypothetical protein PRUPE_ppa004494mg [Prunus persica]
4 Hb_098315_110 0.1542200099 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000329_390 0.1598510822 transcription factor TF Family: C2H2 conserved hypothetical protein [Ricinus communis]
6 Hb_006029_010 0.1598837973 - - PREDICTED: putative disease resistance RPP13-like protein 1 [Populus euphratica]
7 Hb_002997_100 0.1640559852 - - hypothetical protein JCGZ_19555 [Jatropha curcas]
8 Hb_109168_010 0.1660283839 - - protein farnesyltransferase alpha subunit, putative [Ricinus communis]
9 Hb_000176_170 0.1664124217 - - PREDICTED: tetratricopeptide repeat protein 1 [Jatropha curcas]
10 Hb_000857_050 0.1671362277 - - PREDICTED: protein YLS9 [Jatropha curcas]
11 Hb_063716_010 0.1682085573 - - phopholipase d alpha, putative [Ricinus communis]
12 Hb_000040_050 0.1687730807 - - PREDICTED: uncharacterized protein LOC102617857 isoform X1 [Citrus sinensis]
13 Hb_099698_010 0.1700368388 - - -
14 Hb_182026_010 0.1746568062 - - hypothetical protein CICLE_v10003487mg, partial [Citrus clementina]
15 Hb_001247_170 0.1748790518 - - PREDICTED: probable receptor-like protein kinase At5g18500 [Jatropha curcas]
16 Hb_022256_040 0.1763514693 - - PREDICTED: probable E3 ubiquitin-protein ligase rbrA isoform X2 [Jatropha curcas]
17 Hb_000755_080 0.1763518892 - - hypothetical protein RCOM_1016710 [Ricinus communis]
18 Hb_000827_080 0.1814982555 - - catalytic, putative [Ricinus communis]
19 Hb_165350_010 0.1826251388 - - unnamed protein product [Triticum aestivum]
20 Hb_000161_030 0.1832614458 transcription factor TF Family: TCP PREDICTED: transcription factor TCP8 [Jatropha curcas]

Gene co-expression network

sample Hb_000832_200 Hb_000832_200 Hb_000406_040 Hb_000406_040 Hb_000832_200--Hb_000406_040 Hb_007441_070 Hb_007441_070 Hb_000832_200--Hb_007441_070 Hb_098315_110 Hb_098315_110 Hb_000832_200--Hb_098315_110 Hb_000329_390 Hb_000329_390 Hb_000832_200--Hb_000329_390 Hb_006029_010 Hb_006029_010 Hb_000832_200--Hb_006029_010 Hb_002997_100 Hb_002997_100 Hb_000832_200--Hb_002997_100 Hb_001083_030 Hb_001083_030 Hb_000406_040--Hb_001083_030 Hb_012132_030 Hb_012132_030 Hb_000406_040--Hb_012132_030 Hb_165350_010 Hb_165350_010 Hb_000406_040--Hb_165350_010 Hb_000487_100 Hb_000487_100 Hb_000406_040--Hb_000487_100 Hb_017168_010 Hb_017168_010 Hb_000406_040--Hb_017168_010 Hb_003097_190 Hb_003097_190 Hb_000406_040--Hb_003097_190 Hb_000940_040 Hb_000940_040 Hb_007441_070--Hb_000940_040 Hb_011644_020 Hb_011644_020 Hb_007441_070--Hb_011644_020 Hb_019871_020 Hb_019871_020 Hb_007441_070--Hb_019871_020 Hb_001582_030 Hb_001582_030 Hb_007441_070--Hb_001582_030 Hb_001357_190 Hb_001357_190 Hb_007441_070--Hb_001357_190 Hb_000152_890 Hb_000152_890 Hb_007441_070--Hb_000152_890 Hb_000300_530 Hb_000300_530 Hb_098315_110--Hb_000300_530 Hb_001268_230 Hb_001268_230 Hb_098315_110--Hb_001268_230 Hb_004648_040 Hb_004648_040 Hb_098315_110--Hb_004648_040 Hb_000317_080 Hb_000317_080 Hb_098315_110--Hb_000317_080 Hb_130177_010 Hb_130177_010 Hb_098315_110--Hb_130177_010 Hb_098315_110--Hb_006029_010 Hb_014361_100 Hb_014361_100 Hb_000329_390--Hb_014361_100 Hb_022256_040 Hb_022256_040 Hb_000329_390--Hb_022256_040 Hb_001348_050 Hb_001348_050 Hb_000329_390--Hb_001348_050 Hb_000345_530 Hb_000345_530 Hb_000329_390--Hb_000345_530 Hb_011282_030 Hb_011282_030 Hb_000329_390--Hb_011282_030 Hb_000329_390--Hb_002997_100 Hb_000161_030 Hb_000161_030 Hb_006029_010--Hb_000161_030 Hb_004156_060 Hb_004156_060 Hb_006029_010--Hb_004156_060 Hb_000491_080 Hb_000491_080 Hb_006029_010--Hb_000491_080 Hb_007786_010 Hb_007786_010 Hb_006029_010--Hb_007786_010 Hb_182026_010 Hb_182026_010 Hb_006029_010--Hb_182026_010 Hb_000733_060 Hb_000733_060 Hb_006029_010--Hb_000733_060 Hb_002997_100--Hb_022256_040 Hb_002997_100--Hb_182026_010 Hb_000078_130 Hb_000078_130 Hb_002997_100--Hb_000078_130 Hb_000230_330 Hb_000230_330 Hb_002997_100--Hb_000230_330 Hb_002997_100--Hb_000733_060 Hb_012654_010 Hb_012654_010 Hb_002997_100--Hb_012654_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
29.575 7.15735 9.82884 13.495 68.867 38.1369
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.17692 4.84529 30.5212 6.91375 1.94632

CAGE analysis