Hb_000176_170

Information

Type -
Description -
Location Contig176: 466775-477405
Sequence    

Annotation

kegg
ID tcc:TCM_038480
description Tetratricopeptide repeat (TPR)-like superfamily protein
nr
ID XP_012071594.1
description PREDICTED: tetratricopeptide repeat protein 1 [Jatropha curcas]
swissprot
ID Q99614
description Tetratricopeptide repeat protein 1 OS=Homo sapiens GN=TTC1 PE=1 SV=1
trembl
ID A0A067KRM3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04100 PE=4 SV=1
Gene Ontology
ID GO:0005515
description tetratricopeptide repeat protein 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16879: 466728-470883
cDNA
(Sanger)
(ID:Location)		 003_N16.ab1: 468983-470883 , 043_N03.ab1: 468986-470883 , 053_K09.ab1: 469049-470883

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000176_170 0.0 - - PREDICTED: tetratricopeptide repeat protein 1 [Jatropha curcas]
2 Hb_004102_130 0.1208078863 - - conserved hypothetical protein [Ricinus communis]
3 Hb_098315_110 0.1257514292 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000208_290 0.1319378165 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 2 isoform X2 [Jatropha curcas]
5 Hb_011457_110 0.1357526795 - - PREDICTED: protein NETWORKED 1D [Jatropha curcas]
6 Hb_000300_530 0.1359702305 - - PREDICTED: uncharacterized protein DDB_G0286299-like [Gossypium raimondii]
7 Hb_006029_010 0.1513541019 - - PREDICTED: putative disease resistance RPP13-like protein 1 [Populus euphratica]
8 Hb_000161_030 0.1537647719 transcription factor TF Family: TCP PREDICTED: transcription factor TCP8 [Jatropha curcas]
9 Hb_004648_040 0.1564522185 - - PREDICTED: uncharacterized protein LOC105643056 [Jatropha curcas]
10 Hb_006076_020 0.1569301397 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance RPP13-like protein 1 [Vitis vinifera]
11 Hb_000395_140 0.1572710125 - - Oligopeptide transporter, putative [Ricinus communis]
12 Hb_000491_080 0.1598347248 - - PREDICTED: F-box protein SKIP31 [Jatropha curcas]
13 Hb_007441_070 0.1604216151 - - hypothetical protein PRUPE_ppa004494mg [Prunus persica]
14 Hb_043959_010 0.1618455421 - - PREDICTED: transcriptional activator DEMETER isoform X2 [Jatropha curcas]
15 Hb_000173_370 0.1621991809 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 7-like isoform X1 [Jatropha curcas]
16 Hb_004531_090 0.1636828589 - - PREDICTED: VHS domain-containing protein At3g16270 [Jatropha curcas]
17 Hb_006091_030 0.1638801669 desease resistance Gene Name: AAA PREDICTED: cell division control protein 48 homolog C-like isoform X1 [Jatropha curcas]
18 Hb_000413_130 0.1642845478 - - PREDICTED: uncharacterized protein LOC105649409 [Jatropha curcas]
19 Hb_000016_110 0.164832718 - - PREDICTED: pentatricopeptide repeat-containing protein At4g38010 [Jatropha curcas]
20 Hb_002400_270 0.1648470535 - - PREDICTED: probable sucrose-phosphate synthase 1 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000176_170 Hb_000176_170 Hb_004102_130 Hb_004102_130 Hb_000176_170--Hb_004102_130 Hb_098315_110 Hb_098315_110 Hb_000176_170--Hb_098315_110 Hb_000208_290 Hb_000208_290 Hb_000176_170--Hb_000208_290 Hb_011457_110 Hb_011457_110 Hb_000176_170--Hb_011457_110 Hb_000300_530 Hb_000300_530 Hb_000176_170--Hb_000300_530 Hb_006029_010 Hb_006029_010 Hb_000176_170--Hb_006029_010 Hb_172256_010 Hb_172256_010 Hb_004102_130--Hb_172256_010 Hb_000016_180 Hb_000016_180 Hb_004102_130--Hb_000016_180 Hb_003673_020 Hb_003673_020 Hb_004102_130--Hb_003673_020 Hb_000211_080 Hb_000211_080 Hb_004102_130--Hb_000211_080 Hb_004531_090 Hb_004531_090 Hb_004102_130--Hb_004531_090 Hb_098315_110--Hb_000300_530 Hb_001268_230 Hb_001268_230 Hb_098315_110--Hb_001268_230 Hb_004648_040 Hb_004648_040 Hb_098315_110--Hb_004648_040 Hb_000317_080 Hb_000317_080 Hb_098315_110--Hb_000317_080 Hb_130177_010 Hb_130177_010 Hb_098315_110--Hb_130177_010 Hb_098315_110--Hb_006029_010 Hb_004156_060 Hb_004156_060 Hb_000208_290--Hb_004156_060 Hb_000161_030 Hb_000161_030 Hb_000208_290--Hb_000161_030 Hb_000208_290--Hb_006029_010 Hb_022288_010 Hb_022288_010 Hb_000208_290--Hb_022288_010 Hb_154381_050 Hb_154381_050 Hb_000208_290--Hb_154381_050 Hb_006091_030 Hb_006091_030 Hb_000208_290--Hb_006091_030 Hb_000152_890 Hb_000152_890 Hb_011457_110--Hb_000152_890 Hb_000367_290 Hb_000367_290 Hb_011457_110--Hb_000367_290 Hb_017168_010 Hb_017168_010 Hb_011457_110--Hb_017168_010 Hb_024399_010 Hb_024399_010 Hb_011457_110--Hb_024399_010 Hb_011457_110--Hb_000161_030 Hb_005314_010 Hb_005314_010 Hb_011457_110--Hb_005314_010 Hb_003125_050 Hb_003125_050 Hb_000300_530--Hb_003125_050 Hb_023610_010 Hb_023610_010 Hb_000300_530--Hb_023610_010 Hb_012654_020 Hb_012654_020 Hb_000300_530--Hb_012654_020 Hb_011021_030 Hb_011021_030 Hb_000300_530--Hb_011021_030 Hb_000300_530--Hb_154381_050 Hb_006029_010--Hb_000161_030 Hb_006029_010--Hb_004156_060 Hb_000491_080 Hb_000491_080 Hb_006029_010--Hb_000491_080 Hb_007786_010 Hb_007786_010 Hb_006029_010--Hb_007786_010 Hb_182026_010 Hb_182026_010 Hb_006029_010--Hb_182026_010 Hb_000733_060 Hb_000733_060 Hb_006029_010--Hb_000733_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
594.463 171.402 61.7541 24.8938 1232.7 758.538
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
148.402 84.8257 515.861 92.0069 77.3626

CAGE analysis