Hb_011457_110

Information

Type -
Description -
Location Contig11457: 86031-94128
Sequence    

Annotation

kegg
ID rcu:RCOM_0646230
description ATP binding protein, putative
nr
ID XP_012092186.1
description PREDICTED: protein NETWORKED 1D [Jatropha curcas]
swissprot
ID F4HZB5
description Protein NETWORKED 1D OS=Arabidopsis thaliana GN=NET1D PE=3 SV=1
trembl
ID A0A067JC38
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21887 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04405: 85205-91021 , PASA_asmbl_04407: 75828-91021 , PASA_asmbl_04409: 91022-93990
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011457_110 0.0 - - PREDICTED: protein NETWORKED 1D [Jatropha curcas]
2 Hb_000152_890 0.0879020224 - - hypothetical protein JCGZ_26265 [Jatropha curcas]
3 Hb_000367_290 0.1016011576 - - PREDICTED: uncharacterized protein LOC105640583 [Jatropha curcas]
4 Hb_017168_010 0.1148202836 - - conserved hypothetical protein [Ricinus communis]
5 Hb_024399_010 0.1163189642 - - PREDICTED: uncharacterized protein LOC105649031 [Jatropha curcas]
6 Hb_000161_030 0.1183361196 transcription factor TF Family: TCP PREDICTED: transcription factor TCP8 [Jatropha curcas]
7 Hb_005314_010 0.1198279398 - - nucleotide binding protein, putative [Ricinus communis]
8 Hb_001034_020 0.1201696434 - - PREDICTED: uncharacterized protein LOC105641929 [Jatropha curcas]
9 Hb_000413_130 0.1222403388 - - PREDICTED: uncharacterized protein LOC105649409 [Jatropha curcas]
10 Hb_000491_080 0.1224906818 - - PREDICTED: F-box protein SKIP31 [Jatropha curcas]
11 Hb_029281_010 0.1233425077 - - hypothetical protein JCGZ_04025 [Jatropha curcas]
12 Hb_002149_040 0.1238253695 - - conserved hypothetical protein [Ricinus communis]
13 Hb_002400_270 0.1247688601 - - PREDICTED: probable sucrose-phosphate synthase 1 isoform X1 [Jatropha curcas]
14 Hb_004032_350 0.1264506029 - - PREDICTED: splicing factor U2af small subunit B-like isoform X1 [Musa acuminata subsp. malaccensis]
15 Hb_006029_010 0.1270363404 - - PREDICTED: putative disease resistance RPP13-like protein 1 [Populus euphratica]
16 Hb_002818_040 0.1279947465 - - tRNA synthetase-related family protein [Populus trichocarpa]
17 Hb_000206_150 0.1291060463 - - unnamed protein product [Coffea canephora]
18 Hb_005725_070 0.1296581361 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000106_040 0.1308049068 - - PREDICTED: pentatricopeptide repeat-containing protein At4g02750-like [Vitis vinifera]
20 Hb_004531_090 0.1308737455 - - PREDICTED: VHS domain-containing protein At3g16270 [Jatropha curcas]

Gene co-expression network

sample Hb_011457_110 Hb_011457_110 Hb_000152_890 Hb_000152_890 Hb_011457_110--Hb_000152_890 Hb_000367_290 Hb_000367_290 Hb_011457_110--Hb_000367_290 Hb_017168_010 Hb_017168_010 Hb_011457_110--Hb_017168_010 Hb_024399_010 Hb_024399_010 Hb_011457_110--Hb_024399_010 Hb_000161_030 Hb_000161_030 Hb_011457_110--Hb_000161_030 Hb_005314_010 Hb_005314_010 Hb_011457_110--Hb_005314_010 Hb_000152_890--Hb_000367_290 Hb_004032_350 Hb_004032_350 Hb_000152_890--Hb_004032_350 Hb_004724_360 Hb_004724_360 Hb_000152_890--Hb_004724_360 Hb_000001_180 Hb_000001_180 Hb_000152_890--Hb_000001_180 Hb_000152_890--Hb_005314_010 Hb_002133_030 Hb_002133_030 Hb_000152_890--Hb_002133_030 Hb_000116_280 Hb_000116_280 Hb_000367_290--Hb_000116_280 Hb_005295_040 Hb_005295_040 Hb_000367_290--Hb_005295_040 Hb_000367_290--Hb_004032_350 Hb_001975_020 Hb_001975_020 Hb_000367_290--Hb_001975_020 Hb_000413_130 Hb_000413_130 Hb_000367_290--Hb_000413_130 Hb_000107_100 Hb_000107_100 Hb_017168_010--Hb_000107_100 Hb_010222_080 Hb_010222_080 Hb_017168_010--Hb_010222_080 Hb_000340_510 Hb_000340_510 Hb_017168_010--Hb_000340_510 Hb_002026_110 Hb_002026_110 Hb_017168_010--Hb_002026_110 Hb_002942_220 Hb_002942_220 Hb_017168_010--Hb_002942_220 Hb_012132_030 Hb_012132_030 Hb_017168_010--Hb_012132_030 Hb_024399_010--Hb_005314_010 Hb_005725_070 Hb_005725_070 Hb_024399_010--Hb_005725_070 Hb_000481_010 Hb_000481_010 Hb_024399_010--Hb_000481_010 Hb_011930_010 Hb_011930_010 Hb_024399_010--Hb_011930_010 Hb_002818_040 Hb_002818_040 Hb_024399_010--Hb_002818_040 Hb_024399_010--Hb_000340_510 Hb_006029_010 Hb_006029_010 Hb_000161_030--Hb_006029_010 Hb_000161_030--Hb_002818_040 Hb_000078_130 Hb_000078_130 Hb_000161_030--Hb_000078_130 Hb_000491_080 Hb_000491_080 Hb_000161_030--Hb_000491_080 Hb_000161_030--Hb_000413_130 Hb_002377_050 Hb_002377_050 Hb_000161_030--Hb_002377_050 Hb_005314_010--Hb_000001_180 Hb_005314_010--Hb_002818_040 Hb_005314_010--Hb_000413_130 Hb_005914_230 Hb_005914_230 Hb_005314_010--Hb_005914_230 Hb_029281_010 Hb_029281_010 Hb_005314_010--Hb_029281_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
256.21 94.9227 12.3243 23.6214 339.431 188.678
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
58.7906 66.974 141.598 37.7618 30.9645

CAGE analysis