Hb_000041_150

Information

Type -
Description -
Location Contig41: 198183-229413
Sequence    

Annotation

kegg
ID rcu:RCOM_1095590
description Stachyose synthase precursor, putative (EC:2.4.1.67)
nr
ID XP_002524657.1
description Stachyose synthase precursor, putative [Ricinus communis]
swissprot
ID Q9FND9
description Probable galactinol--sucrose galactosyltransferase 5 OS=Arabidopsis thaliana GN=RFS5 PE=1 SV=1
trembl
ID B9SF88
description Stachyose synthase, putative OS=Ricinus communis GN=RCOM_1095590 PE=4 SV=1
Gene Ontology
ID GO:0009507
description raffinose synthase family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40484: 169644-214181 , PASA_asmbl_40486: 211423-211736 , PASA_asmbl_40487: 203033-212589 , PASA_asmbl_40489: 168701-203015 , PASA_asmbl_40492: 221032-224071 , PASA_asmbl_40494: 225042-228399 , PASA_asmbl_40495: 228519-228967
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000041_150 0.0 - - Stachyose synthase precursor, putative [Ricinus communis]
2 Hb_153258_010 0.0763809387 - - PREDICTED: uncharacterized protein LOC105642325 [Jatropha curcas]
3 Hb_127003_010 0.0864556591 - - PREDICTED: uncharacterized protein LOC105633613 [Jatropha curcas]
4 Hb_000997_210 0.1051616682 - - PREDICTED: protein transport protein sec23-1 [Jatropha curcas]
5 Hb_000187_090 0.1100794543 - - PREDICTED: magnesium transporter MRS2-3 [Jatropha curcas]
6 Hb_001221_170 0.1132976926 - - PREDICTED: pentatricopeptide repeat-containing protein At5g50390, chloroplastic [Jatropha curcas]
7 Hb_000120_050 0.1199682126 - - PREDICTED: protein ELF4-LIKE 1 [Jatropha curcas]
8 Hb_000836_630 0.123420871 - - PREDICTED: WD repeat-containing protein 44 [Jatropha curcas]
9 Hb_004440_100 0.1245496035 - - PREDICTED: transmembrane protein 53 [Jatropha curcas]
10 Hb_007558_140 0.1254686937 - - PREDICTED: phospholipid-transporting ATPase 1-like [Jatropha curcas]
11 Hb_098993_010 0.1296547057 - - PREDICTED: chaperone protein dnaJ 72 isoform X2 [Jatropha curcas]
12 Hb_002874_070 0.1327230363 - - PREDICTED: RNA-binding KH domain-containing protein PEPPER-like [Jatropha curcas]
13 Hb_003878_120 0.133147251 transcription factor TF Family: MBF1 PREDICTED: multiprotein-bridging factor 1b-like [Elaeis guineensis]
14 Hb_003297_030 0.1339535625 - - PREDICTED: uncharacterized protein LOC105640530 [Jatropha curcas]
15 Hb_019654_100 0.1363364163 - - PREDICTED: tRNA pseudouridine synthase A, mitochondrial-like [Jatropha curcas]
16 Hb_000369_060 0.1372924496 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 48-like [Jatropha curcas]
17 Hb_000139_380 0.1385723018 - - conserved hypothetical protein [Ricinus communis]
18 Hb_007943_080 0.1388264541 - - PREDICTED: cyclin-dependent kinase F-1 isoform X1 [Jatropha curcas]
19 Hb_013405_050 0.1393925439 - - PREDICTED: probable receptor-like protein kinase At5g24010 [Jatropha curcas]
20 Hb_007304_110 0.1395249761 - - PREDICTED: type I inositol 1,4,5-trisphosphate 5-phosphatase 1 isoform X3 [Jatropha curcas]

Gene co-expression network

sample Hb_000041_150 Hb_000041_150 Hb_153258_010 Hb_153258_010 Hb_000041_150--Hb_153258_010 Hb_127003_010 Hb_127003_010 Hb_000041_150--Hb_127003_010 Hb_000997_210 Hb_000997_210 Hb_000041_150--Hb_000997_210 Hb_000187_090 Hb_000187_090 Hb_000041_150--Hb_000187_090 Hb_001221_170 Hb_001221_170 Hb_000041_150--Hb_001221_170 Hb_000120_050 Hb_000120_050 Hb_000041_150--Hb_000120_050 Hb_007558_140 Hb_007558_140 Hb_153258_010--Hb_007558_140 Hb_153258_010--Hb_000120_050 Hb_153258_010--Hb_000997_210 Hb_003297_030 Hb_003297_030 Hb_153258_010--Hb_003297_030 Hb_002027_130 Hb_002027_130 Hb_153258_010--Hb_002027_130 Hb_182424_010 Hb_182424_010 Hb_127003_010--Hb_182424_010 Hb_170193_010 Hb_170193_010 Hb_127003_010--Hb_170193_010 Hb_127003_010--Hb_153258_010 Hb_000139_380 Hb_000139_380 Hb_127003_010--Hb_000139_380 Hb_098993_010 Hb_098993_010 Hb_127003_010--Hb_098993_010 Hb_000997_210--Hb_007558_140 Hb_000997_210--Hb_098993_010 Hb_000997_210--Hb_002027_130 Hb_073171_110 Hb_073171_110 Hb_000997_210--Hb_073171_110 Hb_002299_060 Hb_002299_060 Hb_000997_210--Hb_002299_060 Hb_000187_090--Hb_001221_170 Hb_003878_120 Hb_003878_120 Hb_000187_090--Hb_003878_120 Hb_000187_090--Hb_153258_010 Hb_000463_140 Hb_000463_140 Hb_000187_090--Hb_000463_140 Hb_006111_070 Hb_006111_070 Hb_000187_090--Hb_006111_070 Hb_019654_100 Hb_019654_100 Hb_001221_170--Hb_019654_100 Hb_001221_170--Hb_153258_010 Hb_010795_010 Hb_010795_010 Hb_001221_170--Hb_010795_010 Hb_003862_050 Hb_003862_050 Hb_001221_170--Hb_003862_050 Hb_001245_070 Hb_001245_070 Hb_001221_170--Hb_001245_070 Hb_007943_080 Hb_007943_080 Hb_000120_050--Hb_007943_080 Hb_000120_050--Hb_007558_140 Hb_000358_080 Hb_000358_080 Hb_000120_050--Hb_000358_080 Hb_010863_080 Hb_010863_080 Hb_000120_050--Hb_010863_080 Hb_000120_050--Hb_003297_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
27.2778 6.38593 6.97766 6.85523 28.4462 18.3059
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.75482 8.92751 36.5177 6.83678 6.45525

CAGE analysis