Hb_006111_070

Information

Type -
Description -
Location Contig6111: 68773-69464
Sequence    

Annotation

kegg
ID pop:POPTR_0008s07660g
description POPTRDRAFT_564111; hypothetical protein
nr
ID XP_002312200.2
description hypothetical protein POPTR_0008s07660g [Populus trichocarpa]
swissprot
ID O80813
description Ycf20-like protein OS=Arabidopsis thaliana GN=At1g65420 PE=2 SV=2
trembl
ID B9HHY4
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0008s07660g PE=4 SV=2
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50990: 69285-70811
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006111_070 0.0 - - hypothetical protein POPTR_0008s07660g [Populus trichocarpa]
2 Hb_015884_030 0.127666186 - - PREDICTED: uncharacterized protein LOC105647778 isoform X1 [Jatropha curcas]
3 Hb_000463_140 0.1302190798 - - Poly(rC)-binding protein, putative [Ricinus communis]
4 Hb_000062_150 0.1356291625 - - PREDICTED: probable carboxylesterase 16 [Jatropha curcas]
5 Hb_024570_010 0.1414941838 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 20 [Jatropha curcas]
6 Hb_012799_030 0.1464648972 - - PREDICTED: pentatricopeptide repeat-containing protein At1g55630-like [Jatropha curcas]
7 Hb_000313_060 0.1473776306 - - hypothetical protein [Beta vulgaris subsp. vulgaris]
8 Hb_001221_170 0.1493340947 - - PREDICTED: pentatricopeptide repeat-containing protein At5g50390, chloroplastic [Jatropha curcas]
9 Hb_008247_010 0.1509525298 - - PREDICTED: leucine--tRNA ligase, cytoplasmic [Jatropha curcas]
10 Hb_000540_130 0.1527380583 transcription factor TF Family: Pseudo ARR-B sensory transduction histidine kinase, putative [Ricinus communis]
11 Hb_000514_060 0.1527561577 transcription factor TF Family: LUG PREDICTED: transcriptional corepressor LEUNIG isoform X1 [Jatropha curcas]
12 Hb_000187_090 0.1560079462 - - PREDICTED: magnesium transporter MRS2-3 [Jatropha curcas]
13 Hb_001439_140 0.1618781357 - - pattern formation protein, putative [Ricinus communis]
14 Hb_002232_030 0.1624019377 - - Pinin, putative [Ricinus communis]
15 Hb_000739_310 0.1626241929 - - PREDICTED: uncharacterized protein LOC105643091 isoform X1 [Jatropha curcas]
16 Hb_001245_070 0.1626349841 - - PREDICTED: uncharacterized protein LOC105633557 [Jatropha curcas]
17 Hb_000034_040 0.1644847122 - - PREDICTED: histidine--tRNA ligase [Jatropha curcas]
18 Hb_000819_080 0.1662632332 - - Plastid-lipid-associated protein, chloroplast precursor, putative [Ricinus communis]
19 Hb_002791_010 0.1662837048 - - PREDICTED: general transcription factor 3C polypeptide 3-like isoform X2 [Jatropha curcas]
20 Hb_003938_080 0.1681012772 - - PREDICTED: uncharacterized protein LOC105644554 [Jatropha curcas]

Gene co-expression network

sample Hb_006111_070 Hb_006111_070 Hb_015884_030 Hb_015884_030 Hb_006111_070--Hb_015884_030 Hb_000463_140 Hb_000463_140 Hb_006111_070--Hb_000463_140 Hb_000062_150 Hb_000062_150 Hb_006111_070--Hb_000062_150 Hb_024570_010 Hb_024570_010 Hb_006111_070--Hb_024570_010 Hb_012799_030 Hb_012799_030 Hb_006111_070--Hb_012799_030 Hb_000313_060 Hb_000313_060 Hb_006111_070--Hb_000313_060 Hb_000034_040 Hb_000034_040 Hb_015884_030--Hb_000034_040 Hb_003938_080 Hb_003938_080 Hb_015884_030--Hb_003938_080 Hb_003544_100 Hb_003544_100 Hb_015884_030--Hb_003544_100 Hb_009411_010 Hb_009411_010 Hb_015884_030--Hb_009411_010 Hb_000010_180 Hb_000010_180 Hb_015884_030--Hb_000010_180 Hb_006915_060 Hb_006915_060 Hb_015884_030--Hb_006915_060 Hb_000041_280 Hb_000041_280 Hb_000463_140--Hb_000041_280 Hb_000514_060 Hb_000514_060 Hb_000463_140--Hb_000514_060 Hb_004117_100 Hb_004117_100 Hb_000463_140--Hb_004117_100 Hb_001243_040 Hb_001243_040 Hb_000463_140--Hb_001243_040 Hb_000574_440 Hb_000574_440 Hb_000463_140--Hb_000574_440 Hb_002025_020 Hb_002025_020 Hb_000463_140--Hb_002025_020 Hb_000173_230 Hb_000173_230 Hb_000062_150--Hb_000173_230 Hb_188279_010 Hb_188279_010 Hb_000062_150--Hb_188279_010 Hb_000056_040 Hb_000056_040 Hb_000062_150--Hb_000056_040 Hb_001221_170 Hb_001221_170 Hb_000062_150--Hb_001221_170 Hb_006371_010 Hb_006371_010 Hb_000062_150--Hb_006371_010 Hb_000739_310 Hb_000739_310 Hb_024570_010--Hb_000739_310 Hb_007545_030 Hb_007545_030 Hb_024570_010--Hb_007545_030 Hb_028089_010 Hb_028089_010 Hb_024570_010--Hb_028089_010 Hb_001019_190 Hb_001019_190 Hb_024570_010--Hb_001019_190 Hb_002374_240 Hb_002374_240 Hb_024570_010--Hb_002374_240 Hb_000819_080 Hb_000819_080 Hb_024570_010--Hb_000819_080 Hb_012799_030--Hb_000034_040 Hb_000201_110 Hb_000201_110 Hb_012799_030--Hb_000201_110 Hb_000193_310 Hb_000193_310 Hb_012799_030--Hb_000193_310 Hb_007416_160 Hb_007416_160 Hb_012799_030--Hb_007416_160 Hb_006711_100 Hb_006711_100 Hb_012799_030--Hb_006711_100 Hb_000803_260 Hb_000803_260 Hb_012799_030--Hb_000803_260 Hb_001930_010 Hb_001930_010 Hb_000313_060--Hb_001930_010 Hb_001439_140 Hb_001439_140 Hb_000313_060--Hb_001439_140 Hb_000878_010 Hb_000878_010 Hb_000313_060--Hb_000878_010 Hb_124315_020 Hb_124315_020 Hb_000313_060--Hb_124315_020 Hb_000313_060--Hb_000514_060 Hb_000390_070 Hb_000390_070 Hb_000313_060--Hb_000390_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.45103 2.25048 2.14243 0.441852 4.42352 3.61465
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.61228 1.16931 6.16673 1.33108 4.04953

CAGE analysis